View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13733_low_9 (Length: 367)
Name: NF13733_low_9
Description: NF13733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13733_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 14830931 - 14830593
Alignment:
| Q |
11 |
cacagaaccgaaaaacagtgtagatttcaacattttcacttcaaaaccaaagtatgattatttctactgtggttcatccttatatggaaacttgaatcca |
110 |
Q |
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| T |
14830931 |
cacagaaccgaaaaacagtgtagatttcaacattttcacttcaaaaccaaagtatgattatttctactgcggttcatccttatatggaaacttgaatcca |
14830832 |
T |
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| Q |
111 |
cagcgtgttcgtgaatggatcgcataccatgtgaaattctttggaccaagttcacattttgtgatacatgatgctggtggtgttcatgaagaggtttatg |
210 |
Q |
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| T |
14830831 |
cagcgtgttcgtgaatggatcgcataccatgtgaaattctttggaccaagttcacattttgtgatacatgatgctggtggtgttcatgaagaggtttatg |
14830732 |
T |
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| Q |
211 |
aagttttgaaaccatggattgaacttgggtatgttacattgcaagatataagggatcaagaaaggtttgatgggtattatcataatcagtttatggttgt |
310 |
Q |
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| T |
14830731 |
aagttttgaaaccatggattgaacttgggtatgttacattgcaagatataagggatcaagaaaggtttgatgggtattatcataatcagtttatggttgt |
14830632 |
T |
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| Q |
311 |
gaatgattgtttgcataggtataagtttatggctaagtg |
349 |
Q |
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| T |
14830631 |
gaatgattgtttgcataggtataagtttatggctaagtg |
14830593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 346
Target Start/End: Original strand, 29847987 - 29848283
Alignment:
| Q |
50 |
ttcaaaaccaaagtatgattatttctactgtggttcatccttatatggaaacttgaatccacagcgtgttcgtgaatggatcgcataccatgtgaaattc |
149 |
Q |
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| T |
29847987 |
ttcaaagccaaagcttgactatttctattgtggatcatctttatttggtaatttgaatcctcaaagagtgagggaatggatagcttatcatgtgagacta |
29848086 |
T |
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| Q |
150 |
tttggaccaagttcacattttgtgatacatgatgctggtggtgttcatgaagaggtttatgaagttttgaaaccatggattgaacttgggtatgttacat |
249 |
Q |
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| T |
29848087 |
tttggaccaaactcacattttgtgttacatgatgctggtggtgttcatgaggaagtgtttgaggttttgaaaccttggattgaacttggttatgttacat |
29848186 |
T |
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| Q |
250 |
tgcaagatataagggatcaagaaaggtttgatgggtattatcataatcagtttatggttgtgaatgattgtttgcataggtataagtttatggctaa |
346 |
Q |
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| T |
29848187 |
tgcaagatattagggatcaagagagatttgatggatattatcataatcaatttatggttttgaatgattgtttgcatagatataagtttatggctaa |
29848283 |
T |
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