View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_high_1 (Length: 655)
Name: NF13734_high_1
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 7 - 643
Target Start/End: Original strand, 48592071 - 48592707
Alignment:
| Q |
7 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592071 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48592170 |
T |
|
| Q |
107 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592171 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48592270 |
T |
|
| Q |
207 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcgtgggtaatcgaaccatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48592271 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
48592370 |
T |
|
| Q |
307 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48592371 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcacacaagctttg |
48592470 |
T |
|
| Q |
407 |
ataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttggttcgcgagg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48592471 |
ataaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaacagataaccaagcagaacaagttagggctttggttcgcgagg |
48592570 |
T |
|
| Q |
507 |
taacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaa |
606 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592571 |
taacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaa |
48592670 |
T |
|
| Q |
607 |
aaggtatgatgctttgttggataagattatttctgat |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592671 |
aaggtatgatgctttgttggataagattatttctgat |
48592707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 7 - 643
Target Start/End: Original strand, 48601766 - 48602402
Alignment:
| Q |
7 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601766 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48601865 |
T |
|
| Q |
107 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601866 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48601965 |
T |
|
| Q |
207 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcgtgggtaatcgaaccatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48601966 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
48602065 |
T |
|
| Q |
307 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48602066 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcacacaagctttg |
48602165 |
T |
|
| Q |
407 |
ataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttggttcgcgagg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48602166 |
ataaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaacagataaccaagcagaacaagttagggctttggttcgcgagg |
48602265 |
T |
|
| Q |
507 |
taacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaa |
606 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602266 |
taacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaa |
48602365 |
T |
|
| Q |
607 |
aaggtatgatgctttgttggataagattatttctgat |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602366 |
aaggtatgatgctttgttggataagattatttctgat |
48602402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 643
Target Start/End: Complemental strand, 23232261 - 23231625
Alignment:
| Q |
7 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
106 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| ||||| ||| ||||||| || | |||||| ||| | |||||||||||||||||||| ||| | |
|
|
| T |
23232261 |
tggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttatatcccttcgacttggctctgctcga |
23232162 |
T |
|
| Q |
107 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
206 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23232161 |
tttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
23232062 |
T |
|
| Q |
207 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcgtgggtaatcgaaccatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
|
|
| T |
23232061 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaaccgaaccattgg |
23231962 |
T |
|
| Q |
307 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
23231961 |
gcaattcctaccgattcgaacccaagaactcgatgaattcattcaaacattgacaaataaatctaaggccagagaaagtttgaacctcacacaagctttg |
23231862 |
T |
|
| Q |
407 |
ataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttggttcgcgagg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23231861 |
ataaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaacagataaccaagcagaacaagttagggctttggttcgcgagg |
23231762 |
T |
|
| Q |
507 |
taacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaa |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23231761 |
taacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttaaaaaaagggccttggacatacacaa |
23231662 |
T |
|
| Q |
607 |
aaggtatgatgctttgttggataagattatttctgat |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23231661 |
gaggtatgatgctttgttggataagattatttctgat |
23231625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 621
Target Start/End: Complemental strand, 23224924 - 23224314
Alignment:
| Q |
11 |
catcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaattta |
110 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||| ||||||| |||| |||||| || | ||||||||||||||||| || || ||||| |
|
|
| T |
23224924 |
catcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatatggaccccttatatcccttcgacttggttctgttccattta |
23224825 |
T |
|
| Q |
111 |
tcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgccta |
210 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||||| ||||||||||| ||| ||||||||| ||||| ||| |
|
|
| T |
23224824 |
tcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttattcttcccgtaaaatgaacattgccatcaacacagttgtcta |
23224725 |
T |
|
| Q |
211 |
tgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcgtgggtaatcgaaccatggcacaa |
310 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| | ||||||||||| || |||||||| || ||| ||||||| | || || || || || | |||| |
|
|
| T |
23224724 |
cgatgatgctacttttgcttttgccccttatggggcatattggaaattcatcaaaaagcttagtacctttgagctcttaggcaaccggactattggacaa |
23224625 |
T |
|
| Q |
311 |
tttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttgataa |
410 |
Q |
| |
|
|| |||| |||||||| | ||||||| | || |||||||||||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||| | | |
|
|
| T |
23224624 |
ttcttaccaattcgaactcgagaactcaacgagttcattcaaactttggaaaataaatccaaggttgaagaaagcgtgaacctcactcaagctttgttga |
23224525 |
T |
|
| Q |
411 |
agctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttggttcgcgaggtaac |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||| || || ||||| | ||| | |||||||| || || || |
|
|
| T |
23224524 |
agctttccaacaacataatatcacggatgatgttgagcattgagagctcaggaacggatagtcaggctgaacaggcgaggacgttggttcgagatgtgac |
23224425 |
T |
|
| Q |
511 |
acaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaaaagg |
610 |
Q |
| |
|
|||||||| || |||||||| |||| |||||||||||| ||| ||||||||| ||||| |||||| | ||||||||||| ||||| ||||| || ||| |
|
|
| T |
23224424 |
ccaaattttcggggaatttaacatttcggattttataggattttgcaagaacttggactttcaaggtctcaaaaagagggcattggatatacataagagg |
23224325 |
T |
|
| Q |
611 |
tatgatgcttt |
621 |
Q |
| |
|
||||||||||| |
|
|
| T |
23224324 |
tatgatgcttt |
23224314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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