View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_10 (Length: 442)
Name: NF13734_high_10
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 32 - 428
Target Start/End: Original strand, 34677288 - 34677684
Alignment:
| Q |
32 |
tttaataaagctgaattgaataatacattctggaaagaataagtgcgcccccaccaccctcccattaccttctccctaaaccaattagattaattaattt |
131 |
Q |
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| T |
34677288 |
tttaataaagctgaattgaataatatattctggaaagaataagtgcgcccccaccaccctcccattaccttctccctaaaccaattagattaattaattt |
34677387 |
T |
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| Q |
132 |
gtctccaccatttgacataaatcatctataatccatgtaaaatcgaatctactaatttttaaacttatatatggtcatgactccagcaagataactaaat |
231 |
Q |
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| T |
34677388 |
gtctcccccatttgacataaataatctataatccatgtaaaatcgaatctactaatttttaaacttatatatggtcatgactccagcaagataactagat |
34677487 |
T |
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| Q |
232 |
aagctattgcaaaacaactctatgacatccacttatgctaatcacaaaccaacactctctcaatttacaaatggcatgtttcttgttatatatttttcca |
331 |
Q |
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| T |
34677488 |
aagctgttgcaaaacaactctatgacatccacttatgctaatcacaaaccaacactctctcaatttacaaatggcatgtttattgttatatatttttcca |
34677587 |
T |
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| Q |
332 |
gttcattcttgggtagtcactagatatacctgattcctttcgaccatnnnnnnncacaatgataattaaaacaaatcctggaattaatatctaattg |
428 |
Q |
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| T |
34677588 |
gttcattcttgggtagtcactaaatatacctgattcctttcgaccataaaaaaacacaatgataattaaaacaaatcctggaattaatatctaattg |
34677684 |
T |
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