View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_14 (Length: 412)
Name: NF13734_high_14
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_14 |
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| [»] scaffold1632 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 4410693 - 4410296
Alignment:
| Q |
1 |
aaatgccacaaaggagatgtcgatatccatcaagatgaacaccatgccccaaataaagaaagatttagttgcaatgataacaagatcacccaataaaatt |
100 |
Q |
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| T |
4410693 |
aaatgccacaaaggagatgtcgatatccatcaagatgaacaccatgccccaaataaagaaagatttagttgcaatgataacaagatcacccaataaaatt |
4410594 |
T |
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| Q |
101 |
caccaagttatatactaaatatatggcataaaattcattagttttccttcaatgtaatagctataaatctaataagatttgaatcttctggctaagcctg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410593 |
caccaagttatatactaaatatgtggcataaaattcattagttttccttcaatgtaatagctataaatctaataagatttgaatcttctggctaagcctg |
4410494 |
T |
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| Q |
201 |
aaattctaaattaaaacaaccatgtttatagaggaaaaacttaaataattaagtttagtaaagagggccaatagtcctcattattatgacttatggaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
4410493 |
aaattctaaattaaaacaaccatgtttatagaggaaaaacttaaataattaagtttagtagagagggccaatagtcctaattattatgacttatggaaaa |
4410394 |
T |
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| Q |
301 |
aattactagaccaaagaaaatcagaaactttggggtattgaattgaaacttcctcaaatataggttaacatgaaatcacatgcatggcatgtgaacac |
398 |
Q |
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| T |
4410393 |
aattacaagaccaaagaaaatcagaaactttggggtattgaattgaaacttcctcaaatataggttaacatgaaatcacatgcatggcatgtgaacac |
4410296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1632 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1632
Description:
Target: scaffold1632; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 825 - 788
Alignment:
| Q |
51 |
aaataaagaaagatttagttgcaatgataacaagatca |
88 |
Q |
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||||||| |||| ||||||||||||||||||||||||| |
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| T |
825 |
aaataaacaaaggtttagttgcaatgataacaagatca |
788 |
T |
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