View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_high_22 (Length: 382)

Name: NF13734_high_22
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_high_22
NF13734_high_22
[»] chr6 (22 HSPs)
chr6 (125-226)||(7051630-7051731)
chr6 (260-367)||(7052512-7052619)
chr6 (61-109)||(20845043-20845091)
chr6 (61-107)||(23843457-23843503)
chr6 (62-109)||(13234139-13234186)
chr6 (61-109)||(548896-548944)
chr6 (65-109)||(7049285-7049329)
chr6 (65-109)||(8644284-8644328)
chr6 (61-109)||(11425979-11426027)
chr6 (61-105)||(19759823-19759867)
chr6 (31-106)||(33541563-33541639)
chr6 (61-103)||(15128186-15128228)
chr6 (65-107)||(32804334-32804376)
chr6 (64-109)||(12576509-12576554)
chr6 (65-109)||(903496-903540)
chr6 (61-109)||(8633220-8633268)
chr6 (65-109)||(12652231-12652275)
chr6 (61-109)||(16913363-16913411)
chr6 (61-100)||(1944131-1944170)
chr6 (63-109)||(4663851-4663897)
chr6 (73-109)||(20745075-20745111)
chr6 (61-105)||(32457681-32457725)
[»] chr3 (33 HSPs)
chr3 (45-109)||(14741356-14741421)
chr3 (60-109)||(50460226-50460275)
chr3 (61-109)||(20201089-20201137)
chr3 (61-109)||(20203271-20203319)
chr3 (61-109)||(28995337-28995385)
chr3 (61-109)||(29182639-29182687)
chr3 (61-105)||(34767014-34767058)
chr3 (61-109)||(43839549-43839597)
chr3 (64-109)||(1165427-1165472)
chr3 (61-109)||(20251687-20251735)
chr3 (61-109)||(21803565-21803613)
chr3 (61-109)||(25374101-25374149)
chr3 (61-109)||(35501790-35501838)
chr3 (62-109)||(26412368-26412415)
chr3 (64-109)||(39340237-39340282)
chr3 (64-109)||(43029721-43029766)
chr3 (65-109)||(913347-913391)
chr3 (65-109)||(33977953-33977997)
chr3 (65-109)||(40797072-40797116)
chr3 (65-105)||(42106151-42106191)
chr3 (61-109)||(50519825-50519872)
chr3 (61-100)||(1220255-1220294)
chr3 (66-105)||(36540707-36540746)
chr3 (71-109)||(21585944-21585982)
chr3 (71-109)||(22893747-22893785)
chr3 (64-109)||(32238027-32238071)
chr3 (61-109)||(2598118-2598166)
chr3 (61-109)||(29776720-29776767)
chr3 (65-109)||(33076351-33076395)
chr3 (62-106)||(37051660-37051704)
chr3 (61-109)||(41882440-41882487)
chr3 (61-109)||(43242846-43242894)
chr3 (61-109)||(47914624-47914671)
[»] scaffold0157 (1 HSPs)
scaffold0157 (61-109)||(1172-1220)
[»] chr8 (34 HSPs)
chr8 (61-109)||(9270056-9270104)
chr8 (61-109)||(9992700-9992748)
chr8 (61-109)||(36545812-36545860)
chr8 (64-109)||(16938302-16938347)
chr8 (61-109)||(5989665-5989713)
chr8 (65-109)||(7954516-7954560)
chr8 (61-109)||(13864394-13864442)
chr8 (61-105)||(15237672-15237716)
chr8 (61-109)||(31147832-31147880)
chr8 (61-109)||(31874119-31874167)
chr8 (66-108)||(2628953-2628995)
chr8 (61-107)||(8054841-8054887)
chr8 (61-107)||(41996580-41996626)
chr8 (64-109)||(3680961-3681006)
chr8 (65-109)||(5328005-5328050)
chr8 (64-109)||(15665577-15665622)
chr8 (64-109)||(32256752-32256797)
chr8 (61-105)||(23766775-23766819)
chr8 (62-106)||(32920688-32920732)
chr8 (66-105)||(32412830-32412869)
chr8 (64-106)||(27534433-27534475)
chr8 (65-106)||(1215373-1215414)
chr8 (64-109)||(16937370-16937415)
chr8 (62-107)||(32104871-32104916)
chr8 (64-109)||(37129702-37129747)
chr8 (64-109)||(44295354-44295399)
chr8 (65-109)||(10042811-10042855)
chr8 (61-109)||(11655941-11655989)
chr8 (62-106)||(12356855-12356899)
chr8 (62-106)||(14530942-14530986)
chr8 (61-105)||(14919427-14919470)
chr8 (65-109)||(16808917-16808960)
chr8 (62-106)||(18190878-18190922)
chr8 (61-109)||(26937560-26937608)
[»] chr7 (38 HSPs)
chr7 (61-109)||(47749769-47749817)
chr7 (61-109)||(25855251-25855299)
chr7 (61-109)||(37399661-37399709)
chr7 (61-109)||(44681496-44681544)
chr7 (64-109)||(13008704-13008749)
chr7 (64-109)||(15124011-15124056)
chr7 (12-109)||(135176-135268)
chr7 (61-109)||(7985927-7985975)
chr7 (65-109)||(39090155-39090199)
chr7 (61-109)||(40775302-40775350)
chr7 (65-109)||(43483639-43483683)
chr7 (64-107)||(30992856-30992899)
chr7 (67-109)||(9933888-9933930)
chr7 (61-102)||(22751474-22751515)
chr7 (62-107)||(26017691-26017736)
chr7 (65-105)||(8319354-8319394)
chr7 (61-109)||(8611654-8611701)
chr7 (61-109)||(23732424-23732472)
chr7 (61-109)||(24470430-24470477)
chr7 (61-109)||(24475378-24475425)
chr7 (65-109)||(28015396-28015440)
chr7 (62-106)||(29804710-29804754)
chr7 (61-109)||(35135214-35135262)
chr7 (61-109)||(35661559-35661607)
chr7 (65-109)||(41748530-41748574)
chr7 (62-109)||(10250512-10250559)
chr7 (45-107)||(43807183-43807246)
chr7 (67-109)||(47156435-47156477)
chr7 (64-109)||(23177613-23177657)
chr7 (61-109)||(42490737-42490786)
chr7 (64-109)||(49166965-49167009)
chr7 (61-109)||(11001881-11001929)
chr7 (73-109)||(19895682-19895718)
chr7 (62-106)||(21329330-21329374)
chr7 (62-106)||(21552489-21552533)
chr7 (77-109)||(35141782-35141814)
chr7 (65-109)||(38649388-38649432)
chr7 (66-106)||(45949711-45949751)
[»] chr5 (32 HSPs)
chr5 (61-109)||(15710577-15710625)
chr5 (65-109)||(28500756-28500800)
chr5 (61-109)||(32390678-32390726)
chr5 (61-107)||(4726961-4727007)
chr5 (60-102)||(13079172-13079214)
chr5 (62-106)||(6074770-6074814)
chr5 (61-109)||(9034979-9035027)
chr5 (65-109)||(14910695-14910739)
chr5 (65-109)||(19646072-19646116)
chr5 (61-109)||(41063427-41063475)
chr5 (61-109)||(41358074-41358122)
chr5 (64-102)||(13007723-13007761)
chr5 (61-102)||(5378337-5378378)
chr5 (64-109)||(6887209-6887254)
chr5 (64-109)||(31645867-31645912)
chr5 (61-105)||(4070589-4070633)
chr5 (61-109)||(28618639-28618686)
chr5 (65-109)||(33486600-33486644)
chr5 (73-109)||(37425043-37425079)
chr5 (65-109)||(41554526-41554570)
chr5 (61-100)||(6647953-6647992)
chr5 (66-109)||(29154294-29154337)
chr5 (61-100)||(41988219-41988258)
chr5 (64-102)||(2415438-2415476)
chr5 (64-102)||(13080184-13080222)
chr5 (73-107)||(29310382-29310416)
chr5 (62-106)||(12524655-12524700)
chr5 (62-106)||(8957247-8957291)
chr5 (62-106)||(17326211-17326255)
chr5 (73-109)||(34843963-34843999)
chr5 (61-109)||(34866462-34866510)
chr5 (62-102)||(39591085-39591125)
[»] chr4 (37 HSPs)
chr4 (61-109)||(2945172-2945220)
chr4 (61-109)||(12519691-12519739)
chr4 (61-109)||(9526370-9526418)
chr4 (61-109)||(16991907-16991955)
chr4 (61-109)||(28990333-28990381)
chr4 (61-109)||(37869448-37869496)
chr4 (61-109)||(38434633-38434681)
chr4 (61-107)||(23067881-23067927)
chr4 (64-109)||(9661891-9661936)
chr4 (64-109)||(20961489-20961534)
chr4 (65-109)||(9474570-9474614)
chr4 (61-109)||(9549502-9549550)
chr4 (65-109)||(30416652-30416696)
chr4 (61-109)||(31601390-31601438)
chr4 (65-109)||(40859685-40859729)
chr4 (61-109)||(41486610-41486658)
chr4 (62-109)||(51646129-51646176)
chr4 (64-109)||(4634321-4634366)
chr4 (62-106)||(3673659-3673703)
chr4 (62-106)||(5388551-5388595)
chr4 (62-109)||(32189018-32189066)
chr4 (61-109)||(46716925-46716973)
chr4 (61-109)||(53903645-53903692)
chr4 (62-105)||(11817108-11817151)
chr4 (62-109)||(34115683-34115730)
chr4 (45-107)||(52555754-52555817)
chr4 (64-106)||(23926079-23926121)
chr4 (61-105)||(4622745-4622790)
chr4 (64-109)||(14542543-14542588)
chr4 (61-109)||(28588596-28588645)
chr4 (64-109)||(46728951-46728996)
chr4 (61-101)||(1645980-1646020)
chr4 (61-109)||(1657597-1657645)
chr4 (65-109)||(15730012-15730056)
chr4 (16-44)||(28588516-28588544)
chr4 (65-109)||(29474385-29474429)
chr4 (61-109)||(54420744-54420791)
[»] chr2 (39 HSPs)
chr2 (61-109)||(19953605-19953653)
chr2 (61-109)||(25623076-25623124)
chr2 (61-109)||(41841985-41842033)
chr2 (62-109)||(6089929-6089976)
chr2 (66-109)||(34479996-34480039)
chr2 (61-107)||(7640389-7640435)
chr2 (61-109)||(5930458-5930506)
chr2 (65-109)||(10589078-10589122)
chr2 (61-109)||(42105783-42105831)
chr2 (62-109)||(37883689-37883736)
chr2 (64-109)||(3390470-3390515)
chr2 (64-109)||(25771483-25771528)
chr2 (64-109)||(27024170-27024215)
chr2 (62-106)||(2251379-2251423)
chr2 (65-109)||(9715575-9715619)
chr2 (62-106)||(22651996-22652040)
chr2 (61-109)||(27191367-27191414)
chr2 (61-109)||(27841181-27841228)
chr2 (65-109)||(29734229-29734273)
chr2 (65-109)||(29812646-29812690)
chr2 (61-109)||(44441421-44441469)
chr2 (66-109)||(13268613-13268656)
chr2 (63-106)||(35353680-35353723)
chr2 (66-109)||(38822115-38822158)
chr2 (77-111)||(12183357-12183391)
chr2 (15-45)||(44951456-44951486)
chr2 (64-109)||(3603023-3603068)
chr2 (64-109)||(25237357-25237402)
chr2 (64-109)||(40125427-40125472)
chr2 (16-44)||(3602940-3602968)
chr2 (65-109)||(7443597-7443641)
chr2 (65-109)||(15673992-15674036)
chr2 (73-105)||(16880000-16880032)
chr2 (73-105)||(16992133-16992165)
chr2 (73-109)||(19581033-19581069)
chr2 (65-109)||(25516533-25516576)
chr2 (65-109)||(26491342-26491385)
chr2 (61-109)||(43566910-43566957)
chr2 (61-105)||(43929391-43929435)
[»] chr1 (36 HSPs)
chr1 (61-109)||(8893328-8893376)
chr1 (61-109)||(15276481-15276529)
chr1 (61-109)||(15698235-15698283)
chr1 (22-109)||(4564512-4564600)
chr1 (61-109)||(630816-630864)
chr1 (61-109)||(5832268-5832316)
chr1 (61-109)||(14717274-14717322)
chr1 (61-109)||(29067085-29067133)
chr1 (61-109)||(45659077-45659125)
chr1 (62-109)||(1768002-1768049)
chr1 (61-107)||(21326508-21326554)
chr1 (61-107)||(44562782-44562828)
chr1 (45-109)||(35077921-35077986)
chr1 (61-109)||(6212917-6212965)
chr1 (61-109)||(10877381-10877429)
chr1 (61-109)||(12148079-12148127)
chr1 (61-105)||(23257123-23257167)
chr1 (66-109)||(33703540-33703583)
chr1 (61-105)||(40992369-40992415)
chr1 (61-107)||(23320475-23320521)
chr1 (64-109)||(22344943-22344988)
chr1 (65-109)||(30853813-30853857)
chr1 (65-109)||(36621391-36621435)
chr1 (61-109)||(38646619-38646667)
chr1 (65-109)||(40488428-40488472)
chr1 (73-108)||(46589221-46589256)
chr1 (68-106)||(34566730-34566768)
chr1 (65-102)||(17579807-17579844)
chr1 (66-107)||(22032123-22032164)
chr1 (65-106)||(44514023-44514064)
chr1 (65-106)||(48655100-48655141)
chr1 (66-109)||(900161-900205)
chr1 (62-106)||(13691792-13691836)
chr1 (65-109)||(32539221-32539265)
chr1 (66-106)||(33177631-33177671)
chr1 (61-109)||(49651870-49651918)
[»] scaffold0340 (1 HSPs)
scaffold0340 (61-109)||(11808-11856)
[»] scaffold0316 (2 HSPs)
scaffold0316 (61-109)||(12234-12282)
scaffold0316 (10-45)||(12324-12359)
[»] scaffold0045 (1 HSPs)
scaffold0045 (61-109)||(9679-9727)
[»] scaffold0024 (1 HSPs)
scaffold0024 (61-109)||(36564-36612)
[»] scaffold0012 (1 HSPs)
scaffold0012 (61-109)||(244671-244719)
[»] scaffold0722 (1 HSPs)
scaffold0722 (61-107)||(5559-5605)
[»] scaffold1294 (1 HSPs)
scaffold1294 (61-109)||(815-863)
[»] scaffold0018 (1 HSPs)
scaffold0018 (65-109)||(137089-137133)
[»] scaffold0011 (1 HSPs)
scaffold0011 (65-109)||(11058-11102)
[»] scaffold0009 (1 HSPs)
scaffold0009 (62-106)||(105088-105132)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 7051630 - 7051731
Alignment:
Q  125 aaaagttgcgacggatttcacacaaaatacataatgttggttgacattttatgttttatagagttccatttaaatccatgcgaattattgagatggattt 224  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051630 aaaagttgcgacggatttcacacaaaatacataatgttgcttgttattttatgttttatagagttccatttaaatccatgcgaattattgagatggattt 7051729  T
Q  225 ta 226  Q
    ||    
T  7051730 ta 7051731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 260 - 367
Target Start/End: Original strand, 7052512 - 7052619
Alignment:
Q  260 tatgtcccatttgggattgattattgnnnnnnnatatttcattgcattctcaaatatattttgatcgtatacgacataaagcatcgatgttgtttttgtc 359  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7052512 tatgtcccatttgggattgattattgtttttttatatttcattgcattctcaaatatattttgatcgtatacgacataaaacatcgatgttgtttttgtc 7052611  T
Q  360 ttcaaagt 367  Q
    ||||||||    
T  7052612 ttcaaagt 7052619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 20845043 - 20845091
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20845043 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 20845091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 23843503 - 23843457
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  23843503 ctcgtttttctatttcccttttattaaaataagtgattttcacatct 23843457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 13234186 - 13234139
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  13234186 tcgtttttctttttcccttttattgaaataagtgattttcacatctat 13234139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 548944 - 548896
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  548944 ctcgtttttctttttcccttttattgaaataagcgattttcacatctat 548896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 7049285 - 7049329
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  7049285 tttttctctttcccttttattgaaataagtgattttcatatctat 7049329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 8644284 - 8644328
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  8644284 tttttctctttcccttttattgaaataagtgtttttcacatctat 8644328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 11425979 - 11426027
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  11425979 ctcgtttttctatttctcttttatttaaataagtgattttcacatctat 11426027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 19759823 - 19759867
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  19759823 ctcgtttttctatttcccttttattgaaataagtgattttcacat 19759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 33541639 - 33541563
Alignment:
Q  31 ttctccttcatccacaaaaccacctctctcc-tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||||||| ||| |||| ||||   ||||||||||| ||||||| |||| ||||||||||||||||||||    
T  33541639 ttctccttcatccactaaatcacccctctaaatcgtttttctccttcccttctatttaaataagtgattttcacatc 33541563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 15128228 - 15128186
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcac 103  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  15128228 ctcgtttttctctttcccttgtattgaaataagtgattttcac 15128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 32804334 - 32804376
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  32804334 tttttctcttacccttttattgaaataagtgattttcacatct 32804376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 12576554 - 12576509
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||    
T  12576554 gtttttctatttccctttaattgaaataagtgattttcacatctat 12576509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 903496 - 903540
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||| || |||||||| ||||||||||||||    
T  903496 tttttctctttcccttttgtttaaataagtaattttcacatctat 903540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 8633268 - 8633220
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| | ||| ||||||||| |||||||||||||||||||||||    
T  8633268 ctcgtttttgtattttccttttattgaaataagtgattttcacatctat 8633220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 12652275 - 12652231
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| || |||||| |||||||||||||||||||||||    
T  12652275 tttttctcttttccatttattgaaataagtgattttcacatctat 12652231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 16913363 - 16913411
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||| ||||| |||| ||| |||||||||||||||||||||||    
T  16913363 ctcgtttttcactttcactttcattgaaataagtgattttcacatctat 16913411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 1944131 - 1944170
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgatttt 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  1944131 ctcgtttttctctttccctcttattgaaataagtgatttt 1944170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 4663897 - 4663851
Alignment:
Q  63 cgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| | |||| ||||||||||||||||||||||||||| ||||    
T  4663897 cgtttttatgtttctcttttattaaaataagtgattttcacaactat 4663851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 20745111 - 20745075
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  20745111 tttcccttttattgaaataaatgattttcacatctat 20745075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 32457681 - 32457725
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||||||||  ||||||| |||||||||| ||||||||    
T  32457681 ctcgtttttctctttcatttttattgaaataagtgactttcacat 32457725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 14741421 - 14741356
Alignment:
Q  45 caaaaccacctctctc-ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||| |||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14741421 caaaatcacctctctaactcgtttttctctttcccttttattgaaataagtgattttcacatctat 14741356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 50460226 - 50460275
Alignment:
Q  60 cctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  50460226 cctcgtttttctctttctcttttattgaaataagtgattttcacatctat 50460275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 20201137 - 20201089
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  20201137 ctcgtttttctctttcacttttattgaaataagtgattttcacatctat 20201089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 20203319 - 20203271
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  20203319 ctcgtttttctctttcacttttattgaaataagtgattttcacatctat 20203271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 28995385 - 28995337
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  28995385 ctcgtttttctatttcccttttattgaaataagtgattttcacatctat 28995337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 29182687 - 29182639
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  29182687 ctcgtttttctctttcccttttattgaaataagtgattttcatatctat 29182639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 34767014 - 34767058
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  34767014 ctcgtttttctctttcccttttattgaaataagtgattttcacat 34767058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 43839597 - 43839549
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  43839597 ctcgcttttctctttcccttttattgaaataagtgattttcacatctat 43839549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 1165472 - 1165427
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  1165472 gtttttctttttcccttttattgaaataagtgattttcacatctat 1165427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 20251687 - 20251735
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  20251687 ctcgtttttctctttccctttgattgaaataagtgattttcatatctat 20251735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 21803565 - 21803613
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||||    
T  21803565 ctcgtttttctctttctcttttattgaaacaagtgattttcacatctat 21803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 25374149 - 25374101
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||    
T  25374149 ctcgtttttctcttttccttttcttgaaataagtgattttcacatctat 25374101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 35501838 - 35501790
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  35501838 ctcgtttttctctttcccttttactgaaataaatgattttcacatctat 35501790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 26412368 - 26412415
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  26412368 tcgtttttctctctcccttttattgaaataagcgattttcacatctat 26412415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 39340237 - 39340282
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| | ||||||| |||||||||||||||||||||||    
T  39340237 gtttttctcttttctttttattgaaataagtgattttcacatctat 39340282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 43029721 - 43029766
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  43029721 gtttttccttttcccttttattgaaataagtgattttcacatctat 43029766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 913391 - 913347
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| |||||||||| || |||||||||||||||||||||||    
T  913391 tttttctatttccctttttttgaaataagtgattttcacatctat 913347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 33977997 - 33977953
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||    
T  33977997 tttttctatttcccttttattgaaataagtgatttttacatctat 33977953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 40797072 - 40797116
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||    
T  40797072 tttttctatttcccttttattgaaataaatgattttcacatctat 40797116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 42106151 - 42106191
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  42106151 tttttctatttcccttttattgaaataagtgattttcacat 42106191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 50519825 - 50519872
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  50519825 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 50519872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 1220294 - 1220255
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgatttt 100  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  1220294 ctcgtttttctctttcccttttgttgaaataagtgatttt 1220255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 36540746 - 36540707
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacat 105  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  36540746 ttttctatttcccttttattgaaataagtgattttcacat 36540707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 21585944 - 21585982
Alignment:
Q  71 tctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  21585944 tcttttccttttattgaaataagtgattttcacatctat 21585982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 22893785 - 22893747
Alignment:
Q  71 tctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  22893785 tctttcccttttattagaataagtgattttcacacctat 22893747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 32238071 - 32238027
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||    
T  32238071 gtttttctctttcccttt-attgaaataagtgattttcatatctat 32238027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 2598118 - 2598166
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| |||||  |||||||| |||||| ||||||||||||||||    
T  2598118 ctcgtttttatcttttgcttttattgaaataactgattttcacatctat 2598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 29776767 - 29776720
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||| |||| | ||||||||| |||||||||||||    
T  29776767 ctcgtttttctctttccc-tttactgaaataagtggttttcacatctat 29776720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 33076351 - 33076395
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||| |||||| ||||||||| |||||||||||||| ||||||||    
T  33076351 ttttcctcttttccttttattgaaataagtgatttttacatctat 33076395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 37051660 - 37051704
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||||||| |||| || |||||||||||||||||    
T  37051660 tcgtttttctccttcccttctatttaagtaagtgattttcacatc 37051704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 41882487 - 41882440
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  41882487 ctcgtttttctatttcccttgtattgaaataagtga-tttcacatctat 41882440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 43242846 - 43242894
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| ||||||||| | ||||||||| ||||||| |||||    
T  43242846 ctcgtttttctctgtcccttttactgaaataagtgtttttcacttctat 43242894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 47914671 - 47914624
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  47914671 ctcgttttt-tctttccattttattgaaaaaagtgattttcacatctat 47914624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 1220 - 1172
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1220 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 1172  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 9270056 - 9270104
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9270056 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 9270104  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 9992700 - 9992748
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9992700 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 9992748  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 36545860 - 36545812
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36545860 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 36545812  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 16938347 - 16938302
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  16938347 gtttttctctttcccttttgttgaaataagtgattttcacatctat 16938302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 5989665 - 5989713
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||    
T  5989665 ctcgtttttctctttccctttttatgaaataagtgattttcacatctat 5989713  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 7954516 - 7954560
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  7954516 tttttctccttcccttttatttaaataagtgattttcacatctat 7954560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 13864394 - 13864442
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  13864394 ctcgtttttttatttcccttttattgaaataagtgattttcacatctat 13864442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 15237716 - 15237672
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||||||||||||||||| || ||||||||||||||||    
T  15237716 ctcgtttttctctttcccttttattgaagtaagtgattttcacat 15237672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 31147880 - 31147832
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||    
T  31147880 ctcgtttttctcgttcccttttattgacataagtgattttcacatctat 31147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 31874119 - 31874167
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  31874119 ctcgtttttccttttcccttttattgaaataagtgattttcacatctat 31874167  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 2628953 - 2628995
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatcta 108  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  2628953 ttttctatttcccttttattgaaataagtgattttcacatcta 2628995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 8054887 - 8054841
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||    
T  8054887 ctcgtttttctatttcccttatattgaaataagtgattttcacatct 8054841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 41996580 - 41996626
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||||    
T  41996580 ctcgtttttgtatttcccttttattgaaataagtgattttcacatct 41996626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 3680961 - 3681006
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||    
T  3680961 gtttttctcttttccttttattgaaataaatgattttcacatctat 3681006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 5328005 - 5328050
Alignment:
Q  65 tttttctctttcccttttatt-aaaataagtgattttcacatctat 109  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  5328005 tttttctctttccctattattgaaaataagtgattttcacatctat 5328050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 15665577 - 15665622
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||||    
T  15665577 gtttttctctttcacttttattgaaataagtaattttcacatctat 15665622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 32256797 - 32256752
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||    
T  32256797 gtttttttatttcccttttattgaaataagtgattttcacatctat 32256752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 23766775 - 23766819
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||    
T  23766775 ctcgtttttctattttcattttattaaaataagtgattttcacat 23766819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 32920688 - 32920732
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  32920688 tcgtttttctccttcctttttatttaaataagtgattttcacatc 32920732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 32412830 - 32412869
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  32412830 ttttccctttcccttttattgaaataagtgattttcacat 32412869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 27534475 - 27534433
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||    
T  27534475 gtttttctccttcctttttatttaaataagtgattttcacatc 27534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 1215414 - 1215373
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  1215414 tttttctccttctcttttatttaaataagtgattttcacatc 1215373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 16937415 - 16937370
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||||| | ||||||||||||| |||||||||    
T  16937415 gtttttctatttcccttttacttaaataagtgatttacacatctat 16937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 32104916 - 32104871
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    |||||||||| ||||  ||||||| |||||||||||||||||||||    
T  32104916 tcgtttttctatttcttttttattgaaataagtgattttcacatct 32104871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 37129747 - 37129702
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| |||  |||||||| |||||||||||||||||||||||    
T  37129747 gtttttctatttttcttttattgaaataagtgattttcacatctat 37129702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 44295354 - 44295399
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||| ||||||| |||||||||||||||||||||||    
T  44295354 gtttttccttttcctttttattgaaataagtgattttcacatctat 44295399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 10042811 - 10042855
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  |||||||||||| ||||||||||||||||| |||||    
T  10042811 tttttctaattcccttttattgaaataagtgattttcacttctat 10042855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 11655989 - 11655941
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| |||| ||||||  ||||||||||||||| |||||||    
T  11655989 ctcgtttttctcgttcctttttatcgaaataagtgattttctcatctat 11655941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 12356855 - 12356899
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| |||||||||||| ||| || |||||||||||||    
T  12356855 tcgtttttctccttcccttttatttaaacaaatgattttcacatc 12356899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 14530986 - 14530942
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||||    
T  14530986 tcgtttttctccttctcttctatttaaataagtgattttcacatc 14530942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 14919470 - 14919427
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||    
T  14919470 ctcgttttt-tctttcccttttgttaaaataagtaattttcacat 14919427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 16808917 - 16808960
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  16808917 tttttctctttcc-ttttattgaaataagtgattatcacatctat 16808960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 18190922 - 18190878
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    |||||||| || ||||||| |||| ||||||||||||||||||||    
T  18190922 tcgtttttatccttcccttctatttaaataagtgattttcacatc 18190878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 26937560 - 26937608
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| || ||||||||||||| |||||||| ||| ||||||||||    
T  26937560 ctcgttttcctttttcccttttattgaaataagtaattctcacatctat 26937608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 47749769 - 47749817
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47749769 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 47749817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 25855299 - 25855251
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  25855299 ctcgtttttctctttcccttttattgaaataagtgattttcatatctat 25855251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 37399661 - 37399709
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  37399661 ctcgtttttctctttcccttttattgaaataaatgattttcacatctat 37399709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 44681496 - 44681544
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  44681496 ctcgtttttctttttcccttttattgaaataagtgattttcacatctat 44681544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 13008749 - 13008704
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||    
T  13008749 gtttttctctttctcttttattgaaataagtgattttcacatctat 13008704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 15124056 - 15124011
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||    
T  15124056 gtttttatctttcccttttattgaaataagtgattttcacatctat 15124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 135268 - 135176
Alignment:
Q  12 tcatcaaaatcctagtttcttctccttcatccacaaaaccacctctctcctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| |||||||||||||||||||||||  |||     |||   ||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  135268 tcatcaaaaccctagtttcttctccttcatccatcaaa----gtct-aactcatttttctctttcccttttattgaaataggtgattttcacatctat 135176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 7985927 - 7985975
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  7985927 ctcgtttttctctttcccttctattgaaataaatgattttcacatctat 7985975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 39090155 - 39090199
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  39090155 tttttctatttcccttttattgaaataagtgattttcacatctat 39090199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 40775302 - 40775350
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  40775302 ctcgtttttccttttcccttttattgaaataagtgattttcacatctat 40775350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 43483639 - 43483683
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  43483639 tttttctatttcccttttattgaaataagtgattttcacatctat 43483683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 30992899 - 30992856
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  30992899 gtttttctatttcccttttattgaaataagtgattttcacatct 30992856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 9933888 - 9933930
Alignment:
Q  67 tttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||| |||||||||||||||||||||||||||| ||||||||    
T  9933888 tttctatttcccttttattaaaataagtgatttttacatctat 9933930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 22751474 - 22751515
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttca 102  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  22751474 ctcgttttactatttcccttttattaaaataagtgattttca 22751515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 26017736 - 26017691
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    |||||||| | ||||||||||||| |||||||||||||||||||||    
T  26017736 tcgtttttttatttcccttttattgaaataagtgattttcacatct 26017691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 8319354 - 8319394
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  8319354 tttttctttttccattttattaaaataagtgattttcacat 8319394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 8611701 - 8611654
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  8611701 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 8611654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 23732472 - 23732424
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||  ||||||| ||||| |||||||||||||||||    
T  23732472 ctcgtttttctctttctattttattgaaatatgtgattttcacatctat 23732424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 24470430 - 24470477
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  24470430 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 24470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 24475378 - 24475425
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  24475378 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 24475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 28015396 - 28015440
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||    
T  28015396 tttttctatttcccttttattgaaataagtgatttacacatctat 28015440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 29804754 - 29804710
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||    
T  29804754 tcgtttttctccttcccttctatttaaataagtgattttcacatc 29804710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 35135262 - 35135214
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| ||||||| ||||||| ||||| |||||||||||||||||    
T  35135262 ctcgtttttatctttcctttttattgaaatacgtgattttcacatctat 35135214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 35661559 - 35661607
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||  ||||||||||||| ||||||||||| |||||||||||    
T  35661559 ctcgtttttccttttcccttttattgaaataagtgatcttcacatctat 35661607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 41748574 - 41748530
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||    
T  41748574 tttttctattttccttttattaaaataggtgattttcacatctat 41748530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 10250559 - 10250512
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||  |||| ||||||| |||||||||||||||||||||||    
T  10250559 tcgtttttctaattcctttttattgaaataagtgattttcacatctat 10250512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 43807246 - 43807183
Alignment:
Q  45 caaaaccacctctctc-ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||| |||||||||  ||||||||||| |||| ||||||||||||||||  ||||||||||||    
T  43807246 caaaatcacctctctaactcgtttttctatttctcttttattaaaataagcaattttcacatct 43807183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 47156435 - 47156477
Alignment:
Q  67 tttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||    
T  47156435 tttctattttccttttattgaaataagtgattttcacatctat 47156477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 23177657 - 23177613
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||    
T  23177657 gtttttctcttttccttt-attgaaataagtgattttcacatctat 23177613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 42490737 - 42490786
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtga-ttttcacatctat 109  Q
    ||||||||||| ||||||||||||  |||||||||| |||||||||||||    
T  42490737 ctcgtttttctttttcccttttatcgaaataagtgatttttcacatctat 42490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 49166965 - 49167009
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||||    
T  49166965 gtttttctatttcccttttattgaaataagtga-tttcacatctat 49167009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 11001881 - 11001929
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| |||| |||||| | |||||||| ||||||||||||||    
T  11001881 ctcgtttttctatttcgcttttaatgaaataagtaattttcacatctat 11001929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 19895718 - 19895682
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  19895718 tttcccttttattgaaataagtgattttcgcatctat 19895682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 21329374 - 21329330
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  21329374 tcgttttcctcattcccttctatttaaataagtgattttcacatc 21329330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 21552533 - 21552489
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||| |||||||| |||||| |||||||||||||    
T  21552533 tcgtttttctccttctcttttatttaaataaatgattttcacatc 21552489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 35141814 - 35141782
Alignment:
Q  77 ccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| |||||||||||||||||||||||    
T  35141814 ccttttattgaaataagtgattttcacatctat 35141782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 38649432 - 38649388
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  38649432 tttttctattttccttttattgaaataagtgatttacacatctat 38649388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 45949751 - 45949711
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||| |||||||||||| ||||| ||||||||||||||    
T  45949751 ttttctccttcccttttatttaaatatgtgattttcacatc 45949711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 15710577 - 15710625
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15710577 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 15710625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 28500756 - 28500800
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  28500756 tttttctctttcccttttattgaaataagtgattttcacatctat 28500800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 32390726 - 32390678
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  32390726 ctcgtttttctctttcctttttattgaaataagtgattttcacatctat 32390678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 4727007 - 4726961
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  4727007 ctcgtttttctatttcccttttattgaaataagtgattttcacatct 4726961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 13079172 - 13079214
Alignment:
Q  60 cctcgtttttctctttcccttttattaaaataagtgattttca 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13079172 cctcgtttttctctttcccttttattgaaataagtgattttca 13079214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 6074814 - 6074770
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||    
T  6074814 tcgtttttctccttcccttttatttaaataagtgattttcacatc 6074770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 9035027 - 9034979
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  9035027 ctcgtttttctctttccattttattaaaataagtgacattcacatctat 9034979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 14910739 - 14910695
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  14910739 tttttctatttcccttttattgaaataagtgattttcacatctat 14910695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 19646116 - 19646072
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  19646116 tttttctctttcccttttaatgaaataagtgattttcacatctat 19646072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 41063475 - 41063427
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  41063475 ctcgtttttctctttccattttattgaaataaatgattttcacatctat 41063427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 41358074 - 41358122
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  41358074 ctcgtttttctcttttccttttattgaaataagttattttcacatctat 41358122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 13007723 - 13007761
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttca 102  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  13007723 gtttttctctttcccttttattgaaataagtgattttca 13007761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 5378337 - 5378378
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttca 102  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  5378337 ctcgtttttctatttcccttttattgaaataagtgattttca 5378378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 6887254 - 6887209
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  6887254 gtttttccttttcccttttattgaaataagtgattttcacatctat 6887209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 31645867 - 31645912
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  31645867 gtttttccttttcccttttattgaaataagtgattttcacatctat 31645912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 4070589 - 4070633
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||    
T  4070589 ctcgtttttctatttcctttttattgaaataagtgattttcacat 4070633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28618639 - 28618686
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  28618639 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 28618686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 33486644 - 33486600
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||    
T  33486644 tttttctatttcccttttattgaaataagtgatttacacatctat 33486600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 37425043 - 37425079
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37425043 tttcccttttattgaaataagtgattttcacatctat 37425079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 41554526 - 41554570
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||    
T  41554526 tttttctatttcccttttattgaaataagtgatttacacatctat 41554570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 6647992 - 6647953
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgatttt 100  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  6647992 ctcgtttttcgctttcccttttattgaaataagtgatttt 6647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 29154294 - 29154337
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||| |||||| |||||||| |||||||||||||||||||||||    
T  29154294 ttttttctttctcttttattgaaataagtgattttcacatctat 29154337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 41988219 - 41988258
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgatttt 100  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  41988219 ctcgtttttctctttcccttttgttgaaataagtgatttt 41988258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 2415438 - 2415476
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttca 102  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  2415438 gtttttctttttcccttttattgaaataagtgattttca 2415476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 13080184 - 13080222
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttca 102  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  13080184 gtttttctcttttccttttattgaaataagtgattttca 13080222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 29310416 - 29310382
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||||| |||||||||||||||||||||    
T  29310416 tttcccttttattgaaataagtgattttcacatct 29310382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 12524700 - 12524655
Alignment:
Q  62 tcgtttttctctttccctttt-attaaaataagtgattttcacatc 106  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  12524700 tcgtttttctccttccctttttatttaaataagtgattttcacatc 12524655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 8957247 - 8957291
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| |||  ||||||| ||||||||||||||||||||    
T  8957247 tcgtttttctccttcttttttatttaaataagtgattttcacatc 8957291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 17326255 - 17326211
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| || |||| |||| ||||||||||||||||||||    
T  17326255 tcgtttttctccttgccttctatttaaataagtgattttcacatc 17326211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 34843963 - 34843999
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  34843963 tttcccttttattgaaataagcgattttcacatctat 34843999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 34866462 - 34866510
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||||    
T  34866462 ctcgtttttctctttctcttttattgaaataagcgagtttcatatctat 34866510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 39591085 - 39591125
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttca 102  Q
    |||||||||||||||  ||||||| ||||||||||||||||    
T  39591085 tcgtttttctctttcaattttatttaaataagtgattttca 39591125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 2945172 - 2945220
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2945172 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 2945220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 12519691 - 12519739
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12519691 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 12519739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 9526418 - 9526370
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  9526418 ctcgtttttctctttccctttgattgaaataagtgattttcacatctat 9526370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 16991907 - 16991955
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  16991907 ctcgtttttctatttcccttttattgaaataagtgattttcacatctat 16991955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28990333 - 28990381
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  28990333 ctcgtttttctctttctcttttattgaaataagtgattttcacatctat 28990381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 37869496 - 37869448
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  37869496 ctcgtttttatctttcccttttattgaaataagtgattttcacatctat 37869448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 38434633 - 38434681
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  38434633 ctcgtttttctatttctcttttattaaaataagtgattttcacatctat 38434681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 23067927 - 23067881
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  23067927 ctcgtttttctatttcccttttattgaaataagtgattttcacatct 23067881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 9661891 - 9661936
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  9661891 gtttttctttttcccttttattgaaataagtgattttcacatctat 9661936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 20961489 - 20961534
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  20961489 gtttttctatttcccttttattgaaataagtgattttcacatctat 20961534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 9474614 - 9474570
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  9474614 tttttctctttcctttttattgaaataagtgattttcacatctat 9474570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 9549502 - 9549550
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  9549502 ctcgtttttctcttttccttttattgaaataagtgatttccacatctat 9549550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 30416696 - 30416652
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  30416696 tttttctatttcccttttattgaaataagtgattttcacatctat 30416652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 31601438 - 31601390
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||    
T  31601438 ctcgttttgctatttcccttttattgaaataagtgattttcacatctat 31601390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 40859685 - 40859729
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  40859685 tttttctatttcccttttattgaaataagtgattttcacatctat 40859729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 41486610 - 41486658
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  41486610 ctcgtttttctctttcccttatattgaaataagagattttcacatctat 41486658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 51646129 - 51646176
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| | ||||||||||||| |||||||||||||||||||||||    
T  51646129 tcgtttttttatttcccttttattgaaataagtgattttcacatctat 51646176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 4634321 - 4634366
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  4634321 gtttttccttttcccttttattgaaataagtgattttcacatctat 4634366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 3673659 - 3673703
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  3673659 tcgtttttctccttcctttttatttaaataagtgattttcacatc 3673703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 5388551 - 5388595
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  5388551 tcgtttttctccttccctcttatttaaataagtgattttcacatc 5388595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 32189018 - 32189066
Alignment:
Q  62 tcgtttttctctttccctttt-attaaaataagtgattttcacatctat 109  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  32189018 tcgtttttctttttccctttttattgaaataagtgattttcacatctat 32189066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 46716973 - 46716925
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||| ||||||||| ||||||||||||||| |||||||    
T  46716973 ctcgtttttctattttccttttattgaaataagtgattttcgcatctat 46716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 53903645 - 53903692
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  53903645 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 53903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 11817108 - 11817151
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||| ||||||||| || |||||||||||||||||||    
T  11817108 tcgtttttctccttcccttttgtttaaataagtgattttcacat 11817151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 34115730 - 34115683
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||||||||| ||| |||||||||| | ||||||    
T  34115730 tcgtttttctctttcccttttattgaaagaagtgatttttatatctat 34115683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 52555817 - 52555754
Alignment:
Q  45 caaaaccacctctctc-ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||| |||||||||  ||||||||||| |||  |||||||| |||||||||||||||||||||    
T  52555817 caaaatcacctctctaactcgtttttctatttatcttttattgaaataagtgattttcacatct 52555754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 23926079 - 23926121
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||    
T  23926079 gtttttctccttcccttctatttaaataagtgattttcacatc 23926121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 4622790 - 4622745
Alignment:
Q  61 ctcgtttttctctttccctt-ttattaaaataagtgattttcacat 105  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||    
T  4622790 ctcgtttttctctttcctttcttattaaaataagtgatttccacat 4622745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 14542588 - 14542543
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||| ||||||| |||||||||||||||||||||||    
T  14542588 gtttttccttttcctttttattgaaataagtgattttcacatctat 14542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28588596 - 28588645
Alignment:
Q  61 ctcgtttttctctttccc-ttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||| ||||||| |||||| |||||||| |||||||    
T  28588596 ctcgtttttctctttccctttttattgaaataaatgattttcgcatctat 28588645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 46728996 - 46728951
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  46728996 gtttttctatttcccttttattgaaataagtgatttacacgtctat 46728951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 1646020 - 1645980
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttc 101  Q
    |||||||||||||||| |||||||| |||||| ||||||||    
T  1646020 ctcgtttttctctttctcttttattgaaataaatgattttc 1645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 1657645 - 1657597
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||| | |||||| ||||| ||||||||||||||||||    
T  1657645 ctcgtttttctatttactttttataaaaattagtgattttcacatctat 1657597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 15730056 - 15730012
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  15730056 tttttctatttcccttttattgaaataagtgatttacacttctat 15730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 28588516 - 28588544
Alignment:
Q  16 caaaatcctagtttcttctccttcatcca 44  Q
    |||||||||||||||||||||||||||||    
T  28588516 caaaatcctagtttcttctccttcatcca 28588544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 29474429 - 29474385
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| ||||||||||||| || ||||||    
T  29474429 tttttctatttcccttttattgaaataagtgatttacatatctat 29474385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 54420791 - 54420744
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||| ||||||||| |||||||||| ||||||||||||    
T  54420791 ctcgtttttctattttccttttattgaaataagtga-tttcacatctat 54420744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 19953605 - 19953653
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19953605 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 19953653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 25623124 - 25623076
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25623124 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 25623076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 41841985 - 41842033
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41841985 ctcgtttttctctttcccttttattgaaataagcgattttcacatctat 41842033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 6089929 - 6089976
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  6089929 tcgtttttctatttcccttttattgaaataagtgattttcacatctat 6089976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 34479996 - 34480039
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  34479996 ttttctctttcccttttattgaaataagtgattttcacatctat 34480039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 7640435 - 7640389
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  7640435 ctcgtttttctatttcccttttattgaaataagtgattttcacatct 7640389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 5930458 - 5930506
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  5930458 ctcgtttttctgtttcccttttatttcaataagtgattttcacatctat 5930506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 10589078 - 10589122
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  10589078 tttttctatttcccttttattgaaataagtgattttcacatctat 10589122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 42105831 - 42105783
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  42105831 ctcgtttttctatttcccttttattgaaataagtgactttcacatctat 42105783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 37883689 - 37883736
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  37883689 tcgtttttctatttcctttttattaaaataagtgattttaacatctat 37883736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 3390470 - 3390515
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  3390470 gtttttccttttcccttttattgaaataagtgattttcacatctat 3390515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 25771483 - 25771528
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  25771483 gtttttccttttcccttttattgaaataagtgattttcacatctat 25771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 27024215 - 27024170
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  27024215 gtttttccttttcccttttattgaaataagtgattttcacatctat 27024170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 2251423 - 2251379
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||    
T  2251423 tcgtttttctccttcccttctatttaaataagtgattttcacatc 2251379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 9715619 - 9715575
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||    
T  9715619 tttttcttttttccttttattgaaataagtgattttcacatctat 9715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 22652040 - 22651996
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||    
T  22652040 tcgtttttctttttcccttttatttaaataagtgatttttacatc 22651996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 27191414 - 27191367
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  27191414 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 27191367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 27841228 - 27841181
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  27841228 ctcgtttttctatttcccttttattgaaataagtga-tttcacatctat 27841181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 29734229 - 29734273
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||    
T  29734229 tttttctatttcccttttattgaaataagtgattttcacacctat 29734273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 29812690 - 29812646
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||    
T  29812690 tttttctctttaccttttattgaaataagtgatttccacatctat 29812646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 44441421 - 44441469
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| |||||| |||||||  |||||||||||||||||||||||    
T  44441421 ctcgtttttatctttctcttttatcgaaataagtgattttcacatctat 44441469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 13268613 - 13268656
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||| ||||||| || |||||||||||||||||||||||    
T  13268613 ttttctcttgcccttttgttgaaataagtgattttcacatctat 13268656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 35353680 - 35353723
Alignment:
Q  63 cgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    |||||||||| |||||||||||| |||||||||||||| |||||    
T  35353680 cgtttttctccttcccttttatttaaataagtgatttttacatc 35353723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 38822115 - 38822158
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||| |||||||||| || |||||||||||||||||||||||    
T  38822115 ttttctatttcccttttgttgaaataagtgattttcacatctat 38822158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 12183391 - 12183357
Alignment:
Q  77 ccttttattaaaataagtgattttcacatctatat 111  Q
    ||||||||| |||||||||||||||||||||||||    
T  12183391 ccttttatttaaataagtgattttcacatctatat 12183357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 44951456 - 44951486
Alignment:
Q  15 tcaaaatcctagtttcttctccttcatccac 45  Q
    |||||||||||||||||||||||||||||||    
T  44951456 tcaaaatcctagtttcttctccttcatccac 44951486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 3603023 - 3603068
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| |||||| || |||||||||||||||| ||||||    
T  3603023 gtttttctcttttccttttcttgaaataagtgattttcatatctat 3603068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 25237402 - 25237357
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||    
T  25237402 gtttttccctttcccttttgttgaaataagttattttcacatctat 25237357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 40125427 - 40125472
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| |||| |||||||| ||||| |||||||||||||||||    
T  40125427 gtttttctatttctcttttattgaaatacgtgattttcacatctat 40125472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 3602940 - 3602968
Alignment:
Q  16 caaaatcctagtttcttctccttcatcca 44  Q
    |||||||||||||||||||||||||||||    
T  3602940 caaaatcctagtttcttctccttcatcca 3602968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 7443641 - 7443597
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  7443641 tttttctattttccttttattgaaataagtaattttcacatctat 7443597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 15674036 - 15673992
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| ||||||||||||| | |||||||    
T  15674036 tttttctatttcccttttattgaaataagtgatttacccatctat 15673992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 16880032 - 16880000
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||||| |||||||||||||||||||    
T  16880032 tttcccttttattgaaataagtgattttcacat 16880000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 16992165 - 16992133
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||||||| |||||||||||||||||||    
T  16992165 tttcccttttattgaaataagtgattttcacat 16992133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 19581069 - 19581033
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  19581069 tttcccttttattgaaataagtgattttcatatctat 19581033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 25516533 - 25516576
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||    
T  25516533 tttttctatttcccttttattgaaataagtga-tttcacatctat 25516576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 26491342 - 26491385
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||    
T  26491342 tttttctatttcccttttattgaaataagtga-tttcacatctat 26491385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 43566910 - 43566957
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||| ||||||| |||||||||| ||||||||||||    
T  43566910 ctcgtttttctatttcctttttattgaaataagtga-tttcacatctat 43566957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 43929435 - 43929391
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    ||||||||| | ||||||||||||| |||||||| ||||||||||    
T  43929435 ctcgtttttgtatttcccttttattgaaataagtcattttcacat 43929391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 8893328 - 8893376
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8893328 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 8893376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 15276529 - 15276481
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15276529 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 15276481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 15698235 - 15698283
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15698235 ctcgtttttctctttcccttttattgaaataagtgattttcacatctat 15698283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 4564512 - 4564600
Alignment:
Q  22 cctagtttcttctccttcatccac-aaaaccacctctctc-ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||||||||| |||| |||| ||||  ||||||||||| |||| |||||||| |||||||||| ||||||||||||    
T  4564512 cctagtttcttctccttcatccaccaaaatcacccctctaactcgtttttctatttctcttttattgaaataagtga-tttcacatctat 4564600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 630864 - 630816
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  630864 ctcgtttttctatttcccttttattgaaataagtgattttcacatctat 630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 5832268 - 5832316
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  5832268 ctcgtttttctatttcccttttattgaaataagtgattttcacatctat 5832316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 14717322 - 14717274
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  14717322 ctcgtttttctttttcccttttattgaaataagtgattttcacatctat 14717274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 29067085 - 29067133
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  29067085 ctcgtttttctctttcccttttattgaaataagtgattctcacatctat 29067133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 45659077 - 45659125
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  45659077 ctcgtttttctctttaccttttattgaaataagtgattttcacatctat 45659125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 1768002 - 1768049
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  1768002 tcgtttttctctttcccttttattgaaataaatgattttcacatctat 1768049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 21326508 - 21326554
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  21326508 ctcgtttttctatttcccttttattgaaataagtgattttcacatct 21326554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 44562828 - 44562782
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  44562828 ctcgtttttctatttcccttttattgaaataagtgattttcacatct 44562782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 35077986 - 35077921
Alignment:
Q  45 caaaaccacctctctc-ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||| |||||||||  ||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  35077986 caaaatcacctctctaactcgtttttctctttcatttttattgaaataagtgattttcacatctat 35077921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 6212965 - 6212917
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  6212965 ctcgtttttccttttcccttttattgaaataagtgattttcacatctat 6212917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 10877381 - 10877429
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  10877381 ctcgtttttctctttcccttttattgaaaaaagtgattttcatatctat 10877429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 12148127 - 12148079
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  12148127 ctcgtttttctatttcctttttattcaaataagtgattttcacatctat 12148079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 23257123 - 23257167
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacat 105  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  23257123 ctcgtttttccctttcccttttattgaaataagtgattttcacat 23257167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 33703583 - 33703540
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  33703583 ttttctatttcccttttattgaaataagtgattttcacatctat 33703540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 40992369 - 40992415
Alignment:
Q  61 ctcgtttttctctttcccttttatt--aaaataagtgattttcacat 105  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  40992369 ctcgtttttctctttcccttttattgaaaaataagtgattttcacat 40992415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 23320475 - 23320521
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  23320475 ctcgtttttctatttcccttttattgaaataagtcattttcacatct 23320521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 22344988 - 22344943
Alignment:
Q  64 gtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  22344988 gtttttccttttcccttttattgaaataagtgattttcacatctat 22344943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 30853857 - 30853813
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||    
T  30853857 tttttctctttccctttcattgaaataaatgattttcacatctat 30853813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 36621391 - 36621435
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||    
T  36621391 tttttctctttctcttttattgaaataagtgactttcacatctat 36621435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 38646619 - 38646667
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||||||||||  |||||||| |||||||||||||| ||||||||    
T  38646619 ctcgtttttctctttttcttttattgaaataagtgattttaacatctat 38646667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 40488472 - 40488428
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||    
T  40488472 tttttctctttcccttttattgaaataaacgattttcacatctat 40488428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 46589221 - 46589256
Alignment:
Q  73 tttcccttttattaaaataagtgattttcacatcta 108  Q
    |||| |||||||||||||||||||||||||||||||    
T  46589221 tttctcttttattaaaataagtgattttcacatcta 46589256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 34566730 - 34566768
Alignment:
Q  68 ttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  34566730 ttctccttcccttttatttaaataagtgattttcacatc 34566768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 17579807 - 17579844
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttca 102  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  17579807 tttttctctttccctttaattgaaataagtgattttca 17579844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 22032164 - 22032123
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  22032164 ttttctcttttccttttattgaaataagtgtttttcacatct 22032123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 44514064 - 44514023
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||    
T  44514064 tttttctatttcccttttattgaaataagtgatttacacatc 44514023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 48655141 - 48655100
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  48655141 tttttatctttcccttttattgaaataagtgaatttcacatc 48655100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 900161 - 900205
Alignment:
Q  66 ttttctctttccctttt-attaaaataagtgattttcacatctat 109  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||    
T  900161 ttttttctttccctttttattgaaataagtgattttcacatctat 900205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 13691836 - 13691792
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||||    
T  13691836 tcgtttttctccttcacttctatttaaataagtgattttcacatc 13691792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 32539265 - 32539221
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||  ||||||| ||||||||||||||| |||||||    
T  32539265 tttttctctttcatttttattgaaataagtgattttcgcatctat 32539221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 33177671 - 33177631
Alignment:
Q  66 ttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    |||| ||||||| ||||||| ||||||||||||||||||||    
T  33177671 ttttttctttcctttttattgaaataagtgattttcacatc 33177631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 49651870 - 49651918
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||| ||||||| |||||| ||| ||||||||||||    
T  49651870 ctcgtttttctatttcctttttattgaaataaatgaatttcacatctat 49651918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 11856 - 11808
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  11856 ctcgtttttctatttcccttttattgaaataagtgattttcacatctat 11808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 12282 - 12234
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  12282 ctcgttcttctctttcccttttattgaaataagtgattttcacacctat 12234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 12359 - 12324
Alignment:
Q  10 catcatcaaaatcctagtttcttctccttcatccac 45  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12359 catcaccaaaatcctagtttcttctccttcatccac 12324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 9727 - 9679
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  9727 ctcgtttttctatttcccttttattgaattaagtgattttcacatctat 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 36564 - 36612
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  36564 ctcgtttttccttttcccttttattgaaataagtgattttcacatctat 36612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 244671 - 244719
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  244671 ctcgtttttctcttttctttttattgaaataagtgattttcacatctat 244719  T

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Target: scaffold0722 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 5605 - 5559
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatct 107  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||    
T  5605 ctcgtttttctatttctcttttattgaaataagtgattttcacatct 5559  T

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Target: scaffold1294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 815 - 863
Alignment:
Q  61 ctcgtttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    |||||||| |||||||||||||||| |||||||||  ||||||||||||    
T  815 ctcgttttcctctttcccttttattgaaataagtggctttcacatctat 863  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 137133 - 137089
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||||||| | |||||||||||||| ||||||||    
T  137133 tttttctatttcccttttaatgaaataagtgattttaacatctat 137089  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 11058 - 11102
Alignment:
Q  65 tttttctctttcccttttattaaaataagtgattttcacatctat 109  Q
    ||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  11058 tttttctttttccctcttattgaaataagtgattttcacagctat 11102  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 105088 - 105132
Alignment:
Q  62 tcgtttttctctttcccttttattaaaataagtgattttcacatc 106  Q
    ||||||||||| ||||| ||| || ||||||||||||||||||||    
T  105088 tcgtttttctccttcccctttgtttaaataagtgattttcacatc 105132  T

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