View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_28 (Length: 356)
Name: NF13734_high_28
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 19857587 - 19857848
Alignment:
| Q |
17 |
agatgaaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagaatgttggcgggg |
116 |
Q |
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| T |
19857587 |
agatgaaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagagtgttggcgggg |
19857686 |
T |
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| Q |
117 |
ttagttactagttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggag |
216 |
Q |
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| T |
19857687 |
ttagttactggttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggag |
19857786 |
T |
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| Q |
217 |
gaaaactttatgagtaattataaagttaatggaaatgtgacagacagtgttttattactatg |
278 |
Q |
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| T |
19857787 |
gaaaactttacgagtaattataaagttaatggaaatgtgacagagaggcttttattactatg |
19857848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 19857886 - 19857954
Alignment:
| Q |
281 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
349 |
Q |
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| T |
19857886 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
19857954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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