View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_high_29 (Length: 347)

Name: NF13734_high_29
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_high_29
NF13734_high_29
[»] chr3 (2 HSPs)
chr3 (148-337)||(10972506-10972695)
chr3 (171-240)||(19185093-19185162)
[»] scaffold0021 (3 HSPs)
scaffold0021 (187-337)||(118553-118703)
scaffold0021 (144-185)||(120112-120153)
scaffold0021 (22-53)||(120242-120273)
[»] chr5 (2 HSPs)
chr5 (151-249)||(16987809-16987907)
chr5 (146-248)||(31552383-31552484)
[»] chr2 (4 HSPs)
chr2 (257-330)||(74450-74523)
chr2 (150-249)||(44395754-44395852)
chr2 (171-240)||(16109942-16110011)
chr2 (175-226)||(3914251-3914302)
[»] scaffold0416 (1 HSPs)
scaffold0416 (154-249)||(14810-14904)
[»] chr8 (3 HSPs)
chr8 (171-249)||(16932546-16932624)
chr8 (191-249)||(13779081-13779139)
chr8 (171-249)||(29600401-29600478)
[»] chr7 (2 HSPs)
chr7 (171-217)||(27845718-27845764)
chr7 (177-238)||(2040072-2040133)
[»] chr1 (3 HSPs)
chr1 (171-240)||(33012771-33012840)
chr1 (190-241)||(17122865-17122916)
chr1 (171-240)||(24230198-24230267)
[»] chr6 (1 HSPs)
chr6 (183-240)||(9344507-9344564)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 148 - 337
Target Start/End: Complemental strand, 10972695 - 10972506
Alignment:
Q  148 aattttgagtttgatggtgcgaaatgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttac 247  Q
    |||||||||||||  ||||||  ||||||||||||||| |||||||||||||||||||  ||||| |||||||| |||| |||||||||||||  |||||    
T  10972695 aattttgagtttggcggtgcgggatgggagttcatcggggttccaacctagttgggatgccgttgtttcttcttgatgtttgtcctttctcctgttttac 10972596  T
Q  248 ctnnnnnnntaatggtcaaagttaattaatattcatctcatgtgatccctaaattatactctcccatactatttctctaccatgcctttg 337  Q
    ||       ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10972595 ctaaaaaaataatggtcaaagttaattaatattcatctcacgtgatccctaaataatactctcccatactatttctctaccatgcctttg 10972506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 19185093 - 19185162
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcct 240  Q
    |||||||||| |||| || |||||||||||||||| ||||||||||| ||| |||  |||||| ||||||    
T  19185093 atgggagttcttcggggtgccaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcct 19185162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 187 - 337
Target Start/End: Complemental strand, 118703 - 118553
Alignment:
Q  187 gttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacctnnnnnnntaatggtcaaagttaattaatattcatctc 286  Q
    ||||||||||||||||||| ||||||||||||||| |||||| || ||||| || ||||||||       ||||||||||||||||||||||||||||||    
T  118703 gttccaacctagttgggatgtcgttgcttcttcttgatgtatatcatttcttctgctttacctaaaaaaataatggtcaaagttaattaatattcatctc 118604  T
Q  287 atgtgatccctaaattatactctcccatactatttctctaccatgcctttg 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  118603 atgtgatccctaaattatactctcccatactatttctctaccatgcctttg 118553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 120153 - 120112
Alignment:
Q  144 aattaattttgagtttgatggtgcgaaatgggagttcatcgg 185  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  120153 aattaattttgagtttgatggtgcggaatgggagttcatcgg 120112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 120273 - 120242
Alignment:
Q  22 tagatatccgtaggtggatgtttatgcttatc 53  Q
    ||||||||||||||||||||||||||||||||    
T  120273 tagatatccgtaggtggatgtttatgcttatc 120242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 16987809 - 16987907
Alignment:
Q  151 tttgagtttgatggtgcgaaatgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacct 249  Q
    ||||||||||  ||||||  ||||||||||||||| || |||||||||||||||| ||||||||||| ||| |||| |||| |||||||| ||||||||    
T  16987809 tttgagtttggcggtgcgggatgggagttcatcggggtgccaacctagttgggatgtcgttgcttctccttgatgtctgtcttttctcctgctttacct 16987907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 31552484 - 31552383
Alignment:
Q  146 ttaattttgagtttgatggtgcgaaatgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctacttt 245  Q
    |||||||||||||||   |||||  ||| |||||||| |  || |||||||||||||||| ||||||||||| ||| |||  |||||| |||||| ||||    
T  31552484 ttaattttgagtttggcagtgcgggatgagagttcattgaggtgccaacctagttgggatgtcgttgcttctccttgatg-ctgtcctctctcctgcttt 31552386  T
Q  246 acc 248  Q
    |||    
T  31552385 acc 31552383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 74450 - 74523
Alignment:
Q  257 taatggtcaaagttaattaatattcatctcatgtgatccctaaattatactctcccatactatttctctaccat 330  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  74450 taatagtcaaagctaattaataatcatctcacgtgacccctaaattatactctcccacactatttctctaccat 74523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 44395754 - 44395852
Alignment:
Q  150 ttttgagtttgatggtgcgaaatgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacct 249  Q
    |||||||||||  ||||||  ||||  ||||||||| || |||||||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||||||    
T  44395754 ttttgagtttggcggtgcgggatggacgttcatcggggtaccaacctagttgggatgtcgttgcttctccttgatgt-tgtcctttctcctgctttacct 44395852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 16110011 - 16109942
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcct 240  Q
    |||||||||||| || || |||||||||||||||| ||||||||||| |   |||| |||||||||||||    
T  16110011 atgggagttcattggggtgccaacctagttgggatgtcgttgcttctccccgatgtttgtcctttctcct 16109942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 3914302 - 3914251
Alignment:
Q  175 gagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgt 226  Q
    ||||||||||| || |||||||||||||||| ||||||||||| ||| ||||    
T  3914302 gagttcatcggggtgccaacctagttgggatgtcgttgcttctccttgatgt 3914251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 14810 - 14904
Alignment:
Q  154 gagtttgatggtgcgaaatgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacct 249  Q
    |||||||  ||||||  ||||||||||||||| || |||||||||||||||| ||||||||||| ||| |||  |||||| |||||| ||||||||    
T  14810 gagtttggcggtgcgggatgggagttcatcggggtgccaacctagttgggatgtcgttgcttctccttgatg-ctgtcctctctcctgctttacct 14904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 16932624 - 16932546
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacct 249  Q
    ||||||||||||||| || ||||| ||||||| || |||||| |||| ||| ||||||||||| ||||||| |||||||    
T  16932624 atgggagttcatcggggtgccaacatagttggaatgtcgttgtttctccttgatgtatgtcctctctcctagtttacct 16932546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 13779081 - 13779139
Alignment:
Q  191 caacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacct 249  Q
    |||| |||||||||| ||||||||| ||||| ||| |||||||||||||| ||||||||    
T  13779081 caacttagttgggatgtcgttgctttttcttgatgcatgtcctttctcctgctttacct 13779139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 29600478 - 29600401
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcctactttacct 249  Q
    ||||||||||||||| || |||||||| || |||| ||||||||||| |||||||  |||||| |||||| ||||||||    
T  29600478 atgggagttcatcggggtgccaacctaattaggatgtcgttgcttctccttaatg-ctgtcctctctcctgctttacct 29600401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 27845764 - 27845718
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttct 217  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  27845764 atgggagttcatcggggttccaacctagttgggatatctttgcttct 27845718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 2040133 - 2040072
Alignment:
Q  177 gttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctc 238  Q
    |||||||||  | |||||||||||||||| ||| |||| | |||| ||||||||||||||||    
T  2040133 gttcatcgggatgccaacctagttgggatgtcggtgctacctcttcatgtatgtcctttctc 2040072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 33012771 - 33012840
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcct 240  Q
    ||||||||||| ||  || |||||||||||||||| ||||||||||| ||| |||| |||||| ||||||    
T  33012771 atgggagttcaacgaggtgccaacctagttgggatgtcgttgcttctccttgatgtttgtcctctctcct 33012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 17122865 - 17122916
Alignment:
Q  190 ccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctccta 241  Q
    |||||||||||||||| ||||||||||| ||| |||| ||||| ||||||||    
T  17122865 ccaacctagttgggatgtcgttgcttctccttgatgtctgtccattctccta 17122916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 24230198 - 24230267
Alignment:
Q  171 atgggagttcatcggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcct 240  Q
    |||||| |||||||| ||  ||||||||||||||| ||||||||||| ||| |||  |||||| ||||||    
T  24230198 atgggaattcatcggggtgtcaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcct 24230267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 9344507 - 9344564
Alignment:
Q  183 cggagttccaacctagttgggatttcgttgcttcttcttaatgtatgtcctttctcct 240  Q
    |||||| |||||||||||||||| |||||| ||  |||| ||||||||| ||||||||    
T  9344507 cggagtgccaacctagttgggatgtcgttgttttctcttgatgtatgtcatttctcct 9344564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University