View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_45 (Length: 241)
Name: NF13734_high_45
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_45 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 28091472 - 28091672
Alignment:
| Q |
31 |
ttgattgtctgtttttattttacagcattcactttagacaactaaatttattattgtcatattgattaagcaaatttgaaacaggcaaacaacttataat |
130 |
Q |
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| T |
28091472 |
ttgattgtctatttttattttacaccattcactttagacaactaaatttattattgtcatattgattaagcaaatttgaaacaggcaaacaacttataat |
28091571 |
T |
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| Q |
131 |
ggattgtgaactgcacatgtaaaattatcttttataaagttgttgagaaggtttccttaaatgcttacaaaatattattatattagttaattgtaagtat |
230 |
Q |
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| T |
28091572 |
ggattgtgaactgcacatgtaaaattatcttttataaagttgttgagaaggtttccgtaaatgcttacaaaatattat--tattagttaattgtaattat |
28091669 |
T |
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| Q |
231 |
tat |
233 |
Q |
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| T |
28091670 |
tat |
28091672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 8836 - 8645
Alignment:
| Q |
42 |
tttttattttacagcattcactttagacaactaaatttattattgtcatattgattaagcaaatttgaaacaggcaaacaac---ttataatggattgtg |
138 |
Q |
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| T |
8836 |
tttttattttacaccattcacttcagacaactaaatttattatggtcatattgattaagcaaatttgaaactggcaaacaacttattataatggattgtg |
8737 |
T |
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| Q |
139 |
aactgcacatgtaaaattatcttttataaagttgttgagaaggtttccttaaatgcttacaaaatattattatattagttaattgtaagtatt |
231 |
Q |
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| T |
8736 |
aactgcacatgaaaaaatattttctataaagttgttgagaagg-ttcattaattgcttacaaaatattattatgttagttaaatgtaattatt |
8645 |
T |
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