View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_48 (Length: 232)
Name: NF13734_high_48
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 44547000 - 44547209
Alignment:
| Q |
14 |
cattaatttcggttctaaactgctaaccacccactacacctcaaacacattaaacatgacctttcattaatccttcaaccaataagcttcttttaattac |
113 |
Q |
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| T |
44547000 |
cattaatttcggttctaaactgctaaccacccactacacctcaaacacattaaacatgacctttcattaatccttcaaccaat-agcttcttttaattac |
44547098 |
T |
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| Q |
114 |
tcactactaactaatgaagatagcgacaataccattacaacctcaatttannnnnnnaactatgacctaaaatgttgtatatcatgaagtatttcgtaat |
213 |
Q |
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| T |
44547099 |
tcactaataactaatgaagatagcgacaataccactacaacctcaatttatttttttaactatgacctaaaatgttgtatatcatgaagtatttcgtaat |
44547198 |
T |
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| Q |
214 |
gtatgatgatg |
224 |
Q |
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| T |
44547199 |
gtatgatgatg |
44547209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 16011275 - 16011315
Alignment:
| Q |
177 |
gacctaaaatgttgtatatcatgaagtatttcgtaatgtat |
217 |
Q |
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| T |
16011275 |
gacctcaaatgttgtttatcatgaagtctttcgtaatgtat |
16011315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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