View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_5 (Length: 525)
Name: NF13734_high_5
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 26845752 - 26846246
Alignment:
| Q |
18 |
gtaatggcactcatccaaatttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttagctgttctctctgatccatgatgcaaaat |
117 |
Q |
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| T |
26845752 |
gtaatggcactcatccaaatttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttagctgttctctctgatccatgatgcaaaat |
26845851 |
T |
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| Q |
118 |
ctcacaccaaacgcccataattcatcagatcccaatgtagtagaaatagcacgcacttacaggcggcattagttgatctcggccattgatttaaaatcga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
26845852 |
ctcacaccaaacgcccataattcatcagatcccaatgtagtagaaatagcacgcacttacacgc---attagttgatctcggccattgatttaaaatcga |
26845948 |
T |
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| Q |
218 |
tcggctcacattgcacctttcctacattaaatttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatct |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845949 |
tcggctcacattgcacctttcctacattaactttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatct |
26846048 |
T |
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| Q |
318 |
ccaaaacgctcaaaagtaaggagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846049 |
ccaaaacgctcaaaagtaaggagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaa |
26846148 |
T |
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| Q |
418 |
tcaatgtgatcgcaatatccactatgccaacaaggtctctgctaaacacaaacgcttcactcttcaccaccccacttccaaagacactcctctctgtg |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26846149 |
tcaatgtgatcgcaatatccactatgccaacaaggtctctgctaaacacaaacgcttcactcttcaccaccccacttccaaagacacccctctctgtg |
26846246 |
T |
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