View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_high_9 (Length: 455)
Name: NF13734_high_9
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 53451916 - 53451539
Alignment:
| Q |
18 |
tgttattggcttggctccttcacacattgcttttaaggatgaagatggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaag |
117 |
Q |
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| T |
53451916 |
tgttattggcttggctccttcacacattgcttttaaggatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaag |
53451817 |
T |
|
| Q |
118 |
gtctctggaaagcggaagaaggtacactgcagcttttctttatttatgagtttatgactcacaatatctttctttataatcagctgattaacatttgtgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53451816 |
gtctctggaaagcggaagaaggtacactgcagcttttctttatttatgagtttatgactcacaatatctttctttataatcagcttattaacatttgtgt |
53451717 |
T |
|
| Q |
218 |
aatttgttgtgtttcaaaaatttgtgttctaaaatggctttttccgtctcttcttcgcctatgtacttttatgcagaatgcgcaacactttgagtccaat |
317 |
Q |
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| T |
53451716 |
aatttgttgtgtttcaaaaatttgtgttctaaaatggctttttccgt---tccttcgcctatgtatttttatgcagaatgcgcaacactttgagtccaat |
53451620 |
T |
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| Q |
318 |
acagcattatgtaaagtttctaccaaaaatgattcttatattgtgaggtacgtgctttgctatatataaatgtaagctgag |
398 |
Q |
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| T |
53451619 |
acagcattatgtaaagtttctaccaaaaatgattcttatattgtgaggtacgtgctttgctatatataaatgtaagctgag |
53451539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 31053917 - 31054305
Alignment:
| Q |
18 |
tgttattggcttggctccttcacacattgcttttaaggatgaagatggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
31053917 |
tgttattggcttggctccttcacacattgcttttaatgatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcaaaccgctgtgaag |
31054016 |
T |
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| Q |
118 |
gtctctggaaagcggaagaaggtacactgcagcttttctttatttatgagtttatgactcacaatatcttt--ctttataatcagctgattaacatttgt |
215 |
Q |
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||||||| ||||||||| |||||||||| || ||| || |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
31054017 |
gtctctgaaaagcggaaaaaggtacactacaacttgtccttatttataagtttatgactcacaatatctttttctttataatctgctgattaacatttga |
31054116 |
T |
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| Q |
216 |
gtaatttgttgt--------------gtttcaaaa-atttgtgttctaaaatggctttttc--cgtct---cttcttcgcct---atgtacttttatgca |
292 |
Q |
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|| |||||||| ||||||||| ||||||||||| ||||||||||||| ||| | || || | ||||| ||||||||| |
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| T |
31054117 |
gtgctttgttgtttttgagttgttgtgtttcaaaacatttgtgttctgaaatggctttttcgtcgtatgtatttattaaaataggatgtatttttatgca |
31054216 |
T |
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| Q |
293 |
gaatgcgcaacactttgagtccaatacagcattatgtaaagtttctaccaaaaatgattcttatattgtgaggtacgtgctttgctata |
381 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |||| |
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| T |
31054217 |
gaatgcgcaacactatgagtccaatacatcattatgtaaagtttctaccaaaaatgattcttatatcgtgaggtatgtggtttgttata |
31054305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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