View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_10 (Length: 462)
Name: NF13734_low_10
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 31027649 - 31028084
Alignment:
| Q |
10 |
attattctcatgacttgttatctttcaatactatgatgtt---gattttggatatttgttgtctatcatgaaaagttataaaagagattaaaggtaatga |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31027649 |
attattctcatgacttgttatcttgcaatactatgatgttgttgattttggatatttgttgtctatcatgaaaggttataaaagagattaaaggtaatga |
31027748 |
T |
|
| Q |
107 |
aaagttgataaaatttatttatgttagattttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgca |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31027749 |
aaagttgataaaatatatttatgttagattttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgca |
31027848 |
T |
|
| Q |
207 |
tctcgattggctctnnnnnnntccattataaataaattgatataaacatttatctttttaacatcaaaaggagnnnnnnnnntatgattaagtttctcnn |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31027849 |
tctcgattggctctaaaaaaatccattataaataaattgatataaacatttatctttttaacatcaaaaggagaaaaaaaaatatgattaagtttctcaa |
31027948 |
T |
|
| Q |
307 |
nnnnntttatgctacgatcttcttgatttccatattttttgttgtaagggatgaaagctctggtatgacctttcactaatccttttttgctttatcttat |
406 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31027949 |
atttttttatgctacgatcatcttgatttccatattttttgttgtaagggatgaaagctctggtatgacctttcactaatccttttttgctttatcttat |
31028048 |
T |
|
| Q |
407 |
acgtacatttttgtcctccatcgtttatactgataac |
443 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
31028049 |
acgtacatttttatcctccat-gtttatactgataac |
31028084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 31038012 - 31038094
Alignment:
| Q |
123 |
atttatgttagattttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgc |
205 |
Q |
| |
|
|||||||||||| | ||||||||| |||| || |||||||||||||| |||||| |||||||||||| |||| |||| |||| |
|
|
| T |
31038012 |
atttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgc |
31038094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 31033216 - 31033078
Alignment:
| Q |
138 |
tttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgcatctcgattggctctnnnnnnntccattataa |
237 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| ||| ||||| |||||||||||||||||| ||||||||| ||| | ||| ||||||| |
|
|
| T |
31033216 |
tttattgagtgatctaaaggggtaaacatgactcatgtatgtacataaaagacaaaatcattttttgcatctccattagttctgaaaaaaatcattatat |
31033117 |
T |
|
| Q |
238 |
ataaattgatataaacatttatctttttaacatcaaaag |
276 |
Q |
| |
|
||||||| ||| | | |||||||||||| |||||||||| |
|
|
| T |
31033116 |
ataaattaatacacaaatttatcttttttacatcaaaag |
31033078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 392
Target Start/End: Complemental strand, 31033029 - 31032965
Alignment:
| Q |
328 |
cttgatttccatattttttgttgtaagggatgaaagctctggtatgacctttcactaatcctttt |
392 |
Q |
| |
|
||||||||||| |||||||||||||||| | | | ||| ||||||||||||| || |||||||| |
|
|
| T |
31033029 |
cttgatttccacattttttgttgtaaggcacggtaactcaggtatgacctttctctcatcctttt |
31032965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University