View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_low_13 (Length: 434)

Name: NF13734_low_13
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_low_13
NF13734_low_13
[»] chr6 (3 HSPs)
chr6 (257-314)||(13561971-13562028)
chr6 (37-116)||(9928083-9928172)
chr6 (47-82)||(27439180-27439215)
[»] chr5 (4 HSPs)
chr5 (257-314)||(38603085-38603142)
chr5 (258-314)||(39051040-39051096)
chr5 (41-82)||(38473221-38473262)
chr5 (313-393)||(38603171-38603248)
[»] chr2 (4 HSPs)
chr2 (257-312)||(38593728-38593783)
chr2 (257-312)||(38597324-38597379)
chr2 (352-393)||(38593640-38593681)
chr2 (352-393)||(38597236-38597277)
[»] scaffold0003 (1 HSPs)
scaffold0003 (47-82)||(48147-48182)


Alignment Details
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 13562028 - 13561971
Alignment:
Q  257 tttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcatttctctctt 314  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  13562028 tttgcgacccaccgtttcaaacccgtccattctgtccgaagccattaatttctctctt 13561971  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 9928172 - 9928083
Alignment:
Q  37 tctcatcactacacctccaatttcttaaatccagaaatcatcaaca----------tcaacatgatgatgatgatcatcaatttcttcat 116  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  9928172 tctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaatcaacatcaacatgatgatgatcatcatcaatttcttcat 9928083  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 27439180 - 27439215
Alignment:
Q  47 acacctccaatttcttaaatccagaaatcatcaaca 82  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27439180 acacctccaatttcttaaatccagaaatcgtcaaca 27439215  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 38603085 - 38603142
Alignment:
Q  257 tttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcatttctctctt 314  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  38603085 tttgcgacccaccgtttcaaagtcgtccattctgtccgaagccattgatttctctctt 38603142  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 39051040 - 39051096
Alignment:
Q  258 ttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcatttctctctt 314  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  39051040 ttgcgacccaccgtttcaaacccgtccattctgtccgaagccattgatttctctctt 39051096  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 38473262 - 38473221
Alignment:
Q  41 atcactacacctccaatttcttaaatccagaaatcatcaaca 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38473262 atcactacacctccaattttttaaatccagaaatcatcaaca 38473221  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 38603171 - 38603248
Alignment:
Q  313 ttgatatattgttcaattttgactctatatttctttaaa-tttacctaagttcatgttgatgaattgtgcgttgtcttcgat 393  Q
    ||||||||||||| |||||||||||||    ||| |||| ||||||||||||||| |||||||| |||| ||||||||||||    
T  38603171 ttgatatattgtttaattttgactcta----tctctaaattttacctaagttcattttgatgaaatgtgggttgtcttcgat 38603248  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 38593783 - 38593728
Alignment:
Q  257 tttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcatttctctc 312  Q
    |||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||    
T  38593783 tttgcgacccaccgtttcaaacccgtccattctgtccgaagctattgatttctctc 38593728  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 38597379 - 38597324
Alignment:
Q  257 tttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcatttctctc 312  Q
    |||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||    
T  38597379 tttgcgacccaccgtttcaaacccgtccattctgtccgaagctattgatttctctc 38597324  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 38593681 - 38593640
Alignment:
Q  352 tttacctaagttcatgttgatgaattgtgcgttgtcttcgat 393  Q
    ||||||||||||||| |||||||| |||| ||||||||||||    
T  38593681 tttacctaagttcattttgatgaaatgtgggttgtcttcgat 38593640  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 38597277 - 38597236
Alignment:
Q  352 tttacctaagttcatgttgatgaattgtgcgttgtcttcgat 393  Q
    ||||||||||||||| |||||||| |||| ||||||||||||    
T  38597277 tttacctaagttcattttgatgaaatgtgggttgtcttcgat 38597236  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 48182 - 48147
Alignment:
Q  47 acacctccaatttcttaaatccagaaatcatcaaca 82  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48182 acacctccaatttcttaaatccagaaatcgtcaaca 48147  T

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