View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_14 (Length: 419)
Name: NF13734_low_14
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 19451443 - 19451819
Alignment:
| Q |
20 |
acagattctagtttctcctgaatttcattcatgaacttgtatatctctttactttgtggatgattggtatctccggcaaaaaattcatgagcagcaccat |
119 |
Q |
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| T |
19451443 |
acagattctagtttctcctgaatttcattcatgaacttgtatatatctttactttgtggatgattggtgtctccggcaaaaaattcatgagcagcaccgt |
19451542 |
T |
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| Q |
120 |
ttatctctattaaactacaaccaggctctttactcacacccttatcattcattagcttacgaagcaaccctacatcattccacctactagctgaagcata |
219 |
Q |
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| T |
19451543 |
ttatctctattaaactacaaccaggctttttactcacacccttatcattcattagctttctaagcaaccctacatcattccatctactagctgaagcata |
19451642 |
T |
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| Q |
220 |
cactttcgacaaaagaacataagcaccaccacaaacactcccgtttgactcaaaaacttgctttgccatttcttcacttagctcaatacttgcatgttgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19451643 |
cactttcgacaaaagaacataagcaccaccacaaacactcccgtttgactcaaaaatttgctttgccatttcttcacttagctcaacacttgcatgttgc |
19451742 |
T |
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| Q |
320 |
ttataacaagcatctaaaagactcctccaaattacagcatctggtttaatcggcatttctgaaatgacattcagagc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
19451743 |
ttataacaagcatctaaaagactcctccaaattacagcatctggtttaatcggcatttccgaaaccacattgagagc |
19451819 |
T |
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