View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_15 (Length: 413)
Name: NF13734_low_15
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 20170978 - 20171357
Alignment:
| Q |
17 |
gagagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
116 |
Q |
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| T |
20170978 |
gagagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
20171077 |
T |
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| Q |
117 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171078 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
20171177 |
T |
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| Q |
217 |
acatcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnggaacactcaac |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |
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| T |
20171178 |
acatcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctcaaaaaaaggaacactcagc |
20171277 |
T |
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| Q |
316 |
cagaccatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataagg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |
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| T |
20171278 |
cagaccatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaagg |
20171357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 44392688 - 44393067
Alignment:
| Q |
17 |
gagagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392688 |
gagagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
44392787 |
T |
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| Q |
117 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392788 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
44392887 |
T |
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| Q |
217 |
acatcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnggaacactcaac |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |
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| T |
44392888 |
acatcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctcaaaaaaaggaacactcagc |
44392987 |
T |
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| Q |
316 |
cagaccatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataagg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |
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| T |
44392988 |
cagaccatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaagg |
44393067 |
T |
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