View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_17 (Length: 409)
Name: NF13734_low_17
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 2210813 - 2211108
Alignment:
| Q |
23 |
aatattaaaattatgcattacatgacaatatgaaagattcatggaaatgaggaggtcaatggcagcagtgaacagcagagcaacagttgacaacaagcgt |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2210813 |
aatattaaaattatgcattagatgacaatatgca-gattcatggaaatgaggaggtcaatggcagcagtgaacagcagagcaacagttgacaacaagcgt |
2210911 |
T |
|
| Q |
123 |
atggaccgcaaacttgacaatgaaattaggttccaacttacaccattcacaaatattcattcacattttcttactttcaactttaattgcatatacccat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2210912 |
atggaccgcaaacttgacaatgaaattaggttccaacttacaccattcacaaatattcattcacattttcttactttcaactttaattgcatatacccat |
2211011 |
T |
|
| Q |
223 |
gtgatgtcttctcatcagtaccaagtttcaactataaagtatatatttgtcnnnnnnnttatatatagtatagtattataagtaatcatagttttaa |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2211012 |
gtgatgtcctctcatcagtaccaagtttcaactataaagtatatatttgtcaaaaaaattatatagtatatagtattataagtaatcaaggttttaa |
2211108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University