View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_low_18 (Length: 406)

Name: NF13734_low_18
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_low_18
NF13734_low_18
[»] chr1 (2 HSPs)
chr1 (20-402)||(5960269-5960650)
chr1 (24-124)||(10549597-10549695)
[»] chr2 (1 HSPs)
chr2 (66-122)||(10926043-10926099)
[»] chr3 (2 HSPs)
chr3 (61-123)||(25478885-25478947)
chr3 (123-171)||(25478816-25478864)
[»] chr5 (3 HSPs)
chr5 (67-122)||(31043986-31044041)
chr5 (61-117)||(20234852-20234908)
chr5 (64-112)||(25762094-25762142)
[»] chr8 (1 HSPs)
chr8 (64-112)||(756290-756338)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 5960269 - 5960650
Alignment:
Q  20 gtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggt 119  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  5960269 gtgcgtgtgcgattgcattgaagatcaagagcaaaaaac-cccatccgtttggataaaatccacactcactaaaagaggttgaggttcgaatatgagggt 5960367  T
Q  120 gatatctctctgttactagaataggatttgcttcaggtattttctataaaaattaccggttgcaagtgtcactttgtctctaaaaagttcacttgtccat 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960368 gatatctctctgttaccagaataggatttgcttcaggtattttctataaaaattaccggttgcaagtgtcactttgtctctaaaaagttcacttgtccat 5960467  T
Q  220 cctctcgaaaagtctttggctttcccagacccgttaaagtcatcactttacattctatttaaccccctcatcgtgacactttctaaaccataatcattaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960468 cctctcgaaaagtctttggctttcccagacccgttaaagtcatcactttacattctatttaaccccctcatcgtgacactttctaaaccataatcattaa 5960567  T
Q  320 tttcatacccacatataaactccaacaacacaccaacttgagattagagagcaatactaataatttcataatgcctatgctac 402  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5960568 attcatacccacatataaactccaacaacacaccaacttgagattagagagcaatactaataatttcataatgcctatactac 5960650  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 10549597 - 10549695
Alignment:
Q  24 gtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggtgata 123  Q
    |||||||||||||||||||||||||| |        ||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  10549597 gtgtgcgattgcattgaagatcaagaacaaaatc--cccatccgtttggatgaaatccacactcactggaagatgttgaggttcgagtatgagggtgata 10549694  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 10926043 - 10926099
Alignment:
Q  66 cgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggtgat 122  Q
    ||||||||| ||||||||||| | || |||||||||| |||||||||||||||||||    
T  10926043 cgtttggatgaaatccacacttattggaagaggttgaggttcgagtatgagggtgat 10926099  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 25478947 - 25478885
Alignment:
Q  61 ccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggtgata 123  Q
    |||||| ||||||| ||||||||||||||   || ||||||| ||||||||||||||||||||    
T  25478947 ccatccatttggattaaatccacactcaccagaacaggttgaggttcgagtatgagggtgata 25478885  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 25478864 - 25478816
Alignment:
Q  123 atctctctgttactagaataggatttgcttcaggtattttctataaaaa 171  Q
    |||||||||||||  |||| ||||||| |||| ||||||||||||||||    
T  25478864 atctctctgttaccggaatgggatttgtttcaagtattttctataaaaa 25478816  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 31044041 - 31043986
Alignment:
Q  67 gtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggtgat 122  Q
    |||||||| | |||||||||||||  | |||||||||||||||||| |||||||||    
T  31044041 gtttggatgacatccacactcactagatgaggttgaagttcgagtaagagggtgat 31043986  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 20234908 - 20234852
Alignment:
Q  61 ccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagg 117  Q
    |||||| ||||||  |||| ||||| |||||||||||||||| ||||||||| ||||    
T  20234908 ccatccttttggaagaaattcacacccactgaaagaggttgaggttcgagtacgagg 20234852  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 25762094 - 25762142
Alignment:
Q  64 tccgtttggataaaatccacactcactgaaagaggttgaagttcgagta 112  Q
    ||||||||||| |||| ||||| ||||| |||||||||| |||||||||    
T  25762094 tccgtttggatgaaattcacacccactggaagaggttgaggttcgagta 25762142  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 756290 - 756338
Alignment:
Q  64 tccgtttggataaaatccacactcactgaaagaggttgaagttcgagta 112  Q
    ||||||| ||| |||| ||||||||||| |||||||||| |||||||||    
T  756290 tccgtttcgatgaaattcacactcactggaagaggttgaggttcgagta 756338  T

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