View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_2 (Length: 1252)
Name: NF13734_low_2
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Original strand, 7650746 - 7651325
Alignment:
| Q |
17 |
aaaaatgagtaaagaagagattttgaagatacaggtacaaaacaattcttcatatcatcaactttgaactattattcttgaagctttttaacttgttaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7650746 |
aaaaatgagtaaagaagagattttgaagatacaggtacaaaacaattcttcatatcaacaactttgaactattattcttgaagctttttaacttgttaaa |
7650845 |
T |
|
| Q |
117 |
cttagtgtattttctgttttaattttaattttgtcatgtatggttctttgtatgtgtatatatgcatatgccatttccaataaagtaaggtgttttgttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7650846 |
cttagtgtattttctgttttaattttaattttgtcatgtatggttctttgtatgtgtatatatgcatatgccatttccaataaagtaaggtgttttgttt |
7650945 |
T |
|
| Q |
217 |
tatcctttatgtaataatactaattcttgttagtttacaatgatgaaattttcactttattttgtttttggtgttattgtttatgcatgcagaaatgtgt |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7650946 |
tatcctttatg---taatactaattcttgttagtttacaatgatgaaattttcactttattttgtttttggtgttattgtttatgcatgcagaaatgtgt |
7651042 |
T |
|
| Q |
317 |
tctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatgaaaatccttctattcactcttctgaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651043 |
tctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatgaaaatccttctattcactcttctgaat |
7651142 |
T |
|
| Q |
417 |
tggccaac--nnnnnnnnntctcttttcatcacgtttatactctnnnnnnnnctctttaatatcaagagaaaaatataaaatatattattaccaccattg |
514 |
Q |
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| T |
7651143 |
tggccaacaaaaaaaaaaatctcttttcatcacgtttatactctaaaaaaaactctttaatatcaagagaaaaatataaaatatattattaccaccattg |
7651242 |
T |
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| Q |
515 |
atttacatacatttgttttattatttttatagcccaagnnnnnnnntactcatgaaaagcttttattttttctctctcactctt |
598 |
Q |
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| T |
7651243 |
atttacatacatttgttttattatttttatagcccaag-aaaaaaatactcatgaaaagcttttattttttctctctcactctt |
7651325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 796 - 1252
Target Start/End: Original strand, 7651570 - 7652014
Alignment:
| Q |
796 |
caggggtttatactattgagatagatattgaacaaggaaaggtgattgttgctgggaatatagacccagatgttctcattaagaagcttgcaaaatcaaa |
895 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7651570 |
caggggtttatactattgagatagatattgaacaaggaaaggtgattgttgctgggaatatagacccagatgttctcatcaagaagcttgcaaaatcaaa |
7651669 |
T |
|
| Q |
896 |
gaaacatgcagaactttggtgtgctccaacggagaacaacaacaataacaaccataacaacatggcaaaccagatgaagaacattcaaattgacactgga |
995 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651670 |
gaaacatgcagaactttggtgtgctccaacggagaacaacaacaataacaaccataacaacatggcaaaccagatgaagaacattcaaattgacactgga |
7651769 |
T |
|
| Q |
996 |
aaaggtggtggagaaaacaataacaacaatgggcaaaaggatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaac |
1095 |
Q |
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| T |
7651770 |
aaaggtggtggagaaaacaataacaacaatgggcaaaaggatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaac |
7651869 |
T |
|
| Q |
1096 |
aacagcttcaacaacagttgcaacaacttcagcagatgaaaggacttgaagatcttaaggggcctcaattcaaggacatgaacatgatgatgccaccacc |
1195 |
Q |
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| T |
7651870 |
aacagctt------------caacaacttcagcagatgaaaggacttgaagatcttaaggggactcaattcaaggacatgaacatgatgatgccaccacc |
7651957 |
T |
|
| Q |
1196 |
aaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagaggatgatgc |
1252 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7651958 |
aaatcaaaatccaaatatgaaaggtgttaaggtcaatttgcctaaagaggatgatgc |
7652014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 797 - 1251
Target Start/End: Original strand, 7656948 - 7657414
Alignment:
| Q |
797 |
aggggtttatactattgagatagatattgaacaaggaaaggtgattgttgctgggaatatagacccagatgttctcattaagaagcttgcaaaatcaaag |
896 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||||||| ||||||| ||| |||| ||| | |||||| |||||||||| |||||||||||||||||| | |
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| T |
7656948 |
aggggtttttgctactgagatagatgctgaacaagggaaggtgaccgtttctggaaatgtggacccaaatgttctcatcaagaagcttgcaaaatcaggg |
7657047 |
T |
|
| Q |
897 |
aaacatgcagaactttggtgtgctccaacggagaacaacaacaataacaaccataacaacatggcaaaccagatgaagaacattcaaattgacactggaa |
996 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||| |||| || ||||||||||| || ||||||| ||||| |
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|
| T |
7657048 |
aaacatgcagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaa |
7657147 |
T |
|
| Q |
997 |
aaggtggtggagaaaacaataacaacaatgggcaaaaggatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaaca |
1096 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||| || |||||||| ||| | ||||||| || ||||||||||| |
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| T |
7657148 |
aaggtggtggaggaaacaataacaacaaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtagccaacaaggacaaaatcctcaaca |
7657247 |
T |
|
| Q |
1097 |
a---cagcttca---------acaacagttgcaacaacttcagcagatgaaaggacttgaagatcttaaggggcctcaattcaaggacatgaacatgatg |
1184 |
Q |
| |
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| |||||||| ||||||| ||||||||||||| || || |||||| ||| |||||| |||| |||||||||||||||||||||||||| |
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| T |
7657248 |
acagcagcttcagcaacagttacaacagctgcaacaacttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaa |
7657347 |
T |
|
| Q |
1185 |
atgccaccaccaaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagaggatgatg |
1251 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
7657348 |
atgccaccaccaaatcaaaatacaaatatgaaaggtgttaagttcaatttgcctgaagagtatgatg |
7657414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 586 - 711
Target Start/End: Original strand, 7651346 - 7651473
Alignment:
| Q |
586 |
ctctctcactcttaggaatatgtatttaccccat--ttcattcactttgatactcaatattattttaaaaattcttttattatatgaaagggaaaaataa |
683 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651346 |
ctctctcactcttagaaatatgtatttaccccatatttcattcactttgatactcaatattattttaaaaattcttttattatatgaaagggaaaaataa |
7651445 |
T |
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| Q |
684 |
cacaaaactcataccaccattagatcca |
711 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
7651446 |
cacaaaactcataccaccattagatcca |
7651473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 7656435 - 7656546
Alignment:
| Q |
300 |
tgcatgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatgaaaatccttc |
399 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
7656435 |
tgcatgcagaaaagtgttctcaaagtgaacatacactgtgacggttgcaagcagaaagttaagaaaatcttgcagaagattgatggtaagaaaatcctta |
7656534 |
T |
|
| Q |
400 |
tattcactcttc |
411 |
Q |
| |
|
|||||||||||| |
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| T |
7656535 |
tattcactcttc |
7656546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 7656192 - 7656252
Alignment:
| Q |
17 |
aaaaatgagtaaagaagagattttgaagatacaggtacaaaacaattcttcatatcatcaact |
79 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||| |
|
|
| T |
7656192 |
aaaaatgagtaaagaagagattttaaagatacaggt--aaaaaaaatcttcatagcatcaact |
7656252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 7656303 - 7656355
Alignment:
| Q |
140 |
tttaattttgtcatgtatggttctttgtatgtgtatatatgcatatgccattt |
192 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||| |||| ||||| |
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|
| T |
7656303 |
tttaattttgtcatgtatgtttctatgtatgtgtatacatgcttatgacattt |
7656355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 48539636 - 48539550
Alignment:
| Q |
303 |
atgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatg |
389 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||| || || || | ||||| ||||||| ||| ||||| |||||||||||| |
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| T |
48539636 |
atgcagaaatctgttctaaaagtgaacatacactgtgatggatgtaaacataaagtaaagaaaatcttacagaaaattgatggtatg |
48539550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 48573891 - 48573805
Alignment:
| Q |
303 |
atgcagaaatgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaaaccttgcagaagattgatggtatg |
389 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||| || || || | ||||| ||||||| ||| ||||| |||||||||||| |
|
|
| T |
48573891 |
atgcagaaatctgttctaaaagtgaacatacactgtgatggatgtaaacataaagtaaagaaaatcttacagaaaattgatggtatg |
48573805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1098 - 1138
Target Start/End: Complemental strand, 48539089 - 48539049
Alignment:
| Q |
1098 |
cagcttcaacaacagttgcaacaacttcagcagatgaaagg |
1138 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
48539089 |
cagcttcaacaacagttacaacaacttcaacagatgaaagg |
48539049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1098 - 1138
Target Start/End: Complemental strand, 48573344 - 48573304
Alignment:
| Q |
1098 |
cagcttcaacaacagttgcaacaacttcagcagatgaaagg |
1138 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
48573344 |
cagcttcaacaacagttacaacaacttcaacagatgaaagg |
48573304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 48895449 - 48895396
Alignment:
| Q |
312 |
tgtgttctcaaagtgaacatgcactgtgacggttgcaagaagaaagttaagaaa |
365 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||| ||||||| |||||| |
|
|
| T |
48895449 |
tgtgttctcaaagtgaacattcactgtgatggttgtaagcagaaagtgaagaaa |
48895396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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