View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_23 (Length: 383)
Name: NF13734_low_23
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 174 - 368
Target Start/End: Complemental strand, 29695187 - 29694993
Alignment:
| Q |
174 |
taagtttgttaagagttgttaataattagttaagttagttatcttatcctctttttatatggacatatatttataaataaggatcattgtattagttgtt |
273 |
Q |
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| T |
29695187 |
taagtttcttaagagttgttaataattagttaaattagttatcttatcctctttttatatggacatatatttataaataaggatcattgtattcgttgtt |
29695088 |
T |
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| Q |
274 |
attcaaatttatcatctataatatttgttcatcactactttatccttttctctcgattatgagttataaattgtaatacataaataatagtacct |
368 |
Q |
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| T |
29695087 |
attcaaatttatcatctataatatttcttcatcactattttatccttttctctcgattatgagttataaattgtaatacataaataatagtacct |
29694993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 29695401 - 29695189
Alignment:
| Q |
4 |
agtttataaagagaagaaaatcttcacctc-acatgtcggtaaaaaacaccccatgatcttcggtatttcatattcttatgtgtgatgcttttcatacaa |
102 |
Q |
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| T |
29695401 |
agtttataaagagtagacaatcctcacctgtacaagtcggtaaaaaacaccccatgatcttcggtatttcatattcttatgtgtgatgattttcatacaa |
29695302 |
T |
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| Q |
103 |
tattttttgtttgtttgtaattttcagagttagaaatgtagatacgttcctacttgaggggatattagaggtaagtttgttaagagttgttaataattag |
202 |
Q |
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| T |
29695301 |
tattttttgtttgtttgtaattttgagagttagaaatgtagatacgttcctacttgaggggatattagaggtaagtttcttaagagttgttaataattag |
29695202 |
T |
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| Q |
203 |
ttaagttagttat |
215 |
Q |
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|||| |||||||| |
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| T |
29695201 |
ttaaattagttat |
29695189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 40138854 - 40138898
Alignment:
| Q |
174 |
taagtttgttaagagttgttaataattagttaagttagttatctt |
218 |
Q |
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| T |
40138854 |
taagtttgttaagagatgttaatagttagttaagttaggtatctt |
40138898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 40840638 - 40840599
Alignment:
| Q |
165 |
tattagaggtaagtttgttaagagttgttaataattagtt |
204 |
Q |
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| T |
40840638 |
tattagagataagtttcttaagagttgttaataattagtt |
40840599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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