View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_25 (Length: 377)
Name: NF13734_low_25
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 48695599 - 48695248
Alignment:
| Q |
1 |
atgaatgaataaaacattgggaaattggagttccaccctagccagccagctagctttgtcctgctgcttcctttggctttgtttgttgttggacagtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695599 |
atgaatgaataaaacattgggaaattggagttccaccctagccagccagctagctttgtcctgctgcttcctttggctttgtttgttgttggacagtaga |
48695500 |
T |
|
| Q |
101 |
agtgggactccaaggattcaggctcattatgcctctgctgctactgcttaaaagcctctttaatgactttaatctcccttccgccgaagataagggtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695499 |
agtgggactccaaggattcaggctcattatgcctctgctgctactgcttaaaagcctctttaatgactttaatctcccttccgccgaagataagggtgat |
48695400 |
T |
|
| Q |
201 |
gatgatgaagtagtggcctcacactcattgggtatatcaatccttaacattccatttccttcatcatcagctctgctgttgttatttatagtattatcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695399 |
gatgatgaagtagtggcctcacactcattgggtatatcaatccttaacattccatttccttcatcatcagctctgctgttgttatttatagtattatcac |
48695300 |
T |
|
| Q |
301 |
catcggatgatgatgaagaagtgttttgttccgaagtagtagatgaagaaga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695299 |
catcggatgatgatgaagaagtgttttgttccgaagtagtagatgaagaaga |
48695248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University