View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_26 (Length: 374)
Name: NF13734_low_26
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 32970331 - 32970675
Alignment:
| Q |
16 |
atatacaaatacaaggcttacacaaaacttcaatcaagaccgatgatcgaataaaagagaactacacataattgataacccaaaaagggcaaattaaaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
32970331 |
atatacaaatacaaggcttacacaaaacttcaatcaagatcaatgatcgaataaaagagaactacacataattaataacccaaaaagggcaaatcaaaac |
32970430 |
T |
|
| Q |
116 |
aataaacaggcaaccacaataaacatatgcaaaataatcannnnnnn-aggaacaaaataatcaaccattcacgctacacaaacatgtagaattaaaata |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32970431 |
aataaacaggcaaccacaagaaacatatgcaaaataatcattttttttaggaacaaaataatcaaccattcacgctacacaaacatgtagaattaaacta |
32970530 |
T |
|
| Q |
215 |
aattcgtcgacaaaataactcggtcttcatcacccatccaaccacatctcaccaatgcctttatcccaagcaaacacgagaaactctcaaagatc-aaca |
313 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
32970531 |
aattcgtcgacaaaataacccggtcttcatcacccaaccaaccacatctcacgaatgcctttatcccaagcaaacacgataaactctcaaagatcaaaca |
32970630 |
T |
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| Q |
314 |
ttcaccggtcttcgacaaaaaccatattccgtaacgcatccaaat |
358 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
32970631 |
ttcacaggtcttcgacaaaaaccttattccgtaacgcatccaaat |
32970675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 3984899 - 3984550
Alignment:
| Q |
16 |
atatacaaatacaaggcttacacaaaacttcaatcaagaccgat----gatcgaataaaagagaactacacataattgataacccaaaaagggcaaatta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3984899 |
atatacaaatacaaggcttacacaaaacttcaatcaagatcgatcgatgatcgaataaaagagaactacacataattgataacccaaaaagggcaaatca |
3984800 |
T |
|
| Q |
112 |
aaacaataaacaggcaaccacaataaacatatgcaaaataatcannnnnnna--ggaacaaaataatcaaccattcacgctacacaaacatgtagaatta |
209 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3984799 |
aaacaataaacaggctaccacaagaaacatatgcaaaataatcattttttttagggaacaaaataatcaaccattcacgctacacaaacatgtagaatta |
3984700 |
T |
|
| Q |
210 |
aaataaattcgtcgacaaaataactcggtcttcatcacccatccaaccacatctcaccaatgcctttatcccaagcaaacacgagaaactctcaaagatc |
309 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
3984699 |
aactaaattcgtcgacaaaataacccggtcttcatcacccaaccaaccacatctcaccaatgcctttatcctaagctaacacgagaaactctcaaagatc |
3984600 |
T |
|
| Q |
310 |
-aacattcaccggtcttcgacaaaaaccatattccgtaacgcatccaaat |
358 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
3984599 |
aaacattcacaggtcttcgacaaaaaccttattccgtaacgcatccaaat |
3984550 |
T |
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