View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_27 (Length: 371)
Name: NF13734_low_27
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 17778057 - 17778421
Alignment:
| Q |
7 |
aaagagtggtatttctactgtccaagagacagaaaatacagaaacagtgcaaggcctaacagggtaactggagctggattctggaaagctacagggacag |
106 |
Q |
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| T |
17778057 |
aaagagtggtatttctactgtccaagagacagaaaatacagaaacagtgcaaggcctaatagggtaactggagctggattctggaaagctacagggacag |
17778156 |
T |
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| Q |
107 |
ataaacctatctactcctcagaaggttccaagtgcattggcctaaagaaatccttagtcttttacaaaggtagagctgctaaaggaatcaaaactgattg |
206 |
Q |
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| T |
17778157 |
ataaacctatctactcctcagaaggttccaagtgcattggcctaaagaaatccttagtcttttacaaaggtagagctgctaaaggaatcaaaactgactg |
17778256 |
T |
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| Q |
207 |
gatgatgcatgagttcaggctaccttctctcatagatccactttcaccaaagaagtacttagagaaaaccattcctgctaatgtaagtaaaacctaatcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17778257 |
gatgatgcatgagttcaggctaccttctctcatagatccactttcaccaaagaagtacttagagaaaaccattcctgctaatgtgagtaaaacctaatcc |
17778356 |
T |
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| Q |
307 |
aaattttattgttatcttagcaaagttataattttcaatgcactcacattacgatctttgatatt |
371 |
Q |
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| T |
17778357 |
aaattttattgttatcttagcgaagttataattttcaatgcactcacattacgatccttgatatt |
17778421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 24257834 - 24257598
Alignment:
| Q |
7 |
aaagagtggtatttctactgtccaagagacagaaaatacagaaacagtgcaaggcctaacagggtaactggagctggattctggaaagctacagggacag |
106 |
Q |
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| T |
24257834 |
aaagagtggtatttttactgtccaagagacagaaagtacagaaacagtgcaagacctaatagggtaacaagagctgggttttggaaagcaacaggaacag |
24257735 |
T |
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| Q |
107 |
ataaacctatctactcctcagaaggttccaagtgcattggcctaaagaaatccttagtcttttacaaaggtagagctgctaaaggaatcaaaactgattg |
206 |
Q |
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| T |
24257734 |
acagacctatttattcctcagagggttctaagtgtattggcttgaaaaaatccttagttttctacaaaggtagagctgccaaaggagtcaaaactgattg |
24257635 |
T |
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| Q |
207 |
gatgatgcatgagttcaggctaccttctctcatagat |
243 |
Q |
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| T |
24257634 |
gatgatgcatgagtttagactaccttctctcatagat |
24257598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 3557809 - 3558032
Alignment:
| Q |
6 |
aaaagagtggtatttctactgtccaagagacagaaaatacagaaacagtgcaaggcctaacagggtaactggagctggattctggaaagctacagggaca |
105 |
Q |
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|||||| ||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||| || || || |||||||||| ||||| || || || || |
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| T |
3557809 |
aaaagaatggtatttctattgtccaagggacagaaaatatagaaacagttcaagacctaatagagttacaagagctggattttggaaggcaactggaact |
3557908 |
T |
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| Q |
106 |
gataaacctatctactcctcagaaggttccaagtgcattggcctaaagaaatccttagtcttttacaaaggtagagctgctaaaggaatcaaaactgatt |
205 |
Q |
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|||| |||||| ||||| ||||| || || |||||||| | ||||| || | ||||| || || ||||||||||| ||||| || |||||||||| |
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| T |
3557909 |
gatagacctatatactcatcagatgg---aaaatgcattggtttgaagaagtcacttgtcttctataagggtagagctgccaaagggatgaaaactgatt |
3558005 |
T |
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| Q |
206 |
ggatgatgcatgagttcaggctacctt |
232 |
Q |
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| T |
3558006 |
ggatgatgcatgagtttaggctacctt |
3558032 |
T |
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