View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_28 (Length: 368)
Name: NF13734_low_28
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 33982287 - 33981949
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33982287 |
aaaatatatagtatgatattatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
33982188 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattattcc |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
33982187 |
ctcagatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattcttcc |
33982088 |
T |
|
| Q |
213 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagttannnnnnngtgaaagtatcactgctggaagtgtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
33982087 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagttatttttttgtgaaagtatcactgttggaagtgtca |
33981988 |
T |
|
| Q |
313 |
ctttagttccaatgttgtactgttgttgtcggcaaatga |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33981987 |
ctttagttccaatgttgtactgttgttgtcggcaaatga |
33981949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 24438261 - 24438595
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
24438261 |
aaaatatatagtatgattttatagtatatggaattgcttcatcttgtaagagagccaaagtttact----ggtgtgtggaagtagattaatgattctaat |
24438356 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattattcc |
212 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |
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|
| T |
24438357 |
ctcagatgcatcatgcaactggtttgttttaatcttatgatggtttaagttatgttttcttgccattaacctttgatgttttctattctcttattcttcc |
24438456 |
T |
|
| Q |
213 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagttannnnnnngtgaaagtatcactgctggaagtgtca |
312 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||| |||| |||| ||||| ||||||||||| |
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|
| T |
24438457 |
tctgcatagtgtttgaaaacctagctagttttcaagacacaaaatttggttttggtattcaagttattttttggtgagagtagcactgttggaagtgtca |
24438556 |
T |
|
| Q |
313 |
ctttagttccaatgttgtactgttgttgtcggcaaatga |
351 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
24438557 |
ctttagttccaatgttgtactattgttgtccgcaaatga |
24438595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 38728929 - 38728594
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38728929 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaaaagagccaaggtttact----ggtgtgtggaagtagattaatgtttctaat |
38728834 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattattcc |
212 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
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|
| T |
38728833 |
ctcagctgcatcatataactggtttgttttaatcttatggtggtttaagttatgttttcttgccattaacctttgatgttttccattctcttattcttcc |
38728734 |
T |
|
| Q |
213 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagttannnnnnngtg-aaagtatcactgctggaagtgtc |
311 |
Q |
| |
|
| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||| ||||||||| || |||||||||| |
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|
| T |
38728733 |
tttgcataatgtttgaaaacctagctagttttcaatgcacaaattttggttttggtattcaggttattttttggtgaaaagtatcattgttggaagtgtc |
38728634 |
T |
|
| Q |
312 |
actttagttccaatgttgtactgttgttgtcggcaaatga |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38728633 |
actttagttccaatgttgtactgttgttgtccgcaaatga |
38728594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 16142971 - 16142637
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| |
|
|
| T |
16142971 |
aaaatatatagtatgatttgatagtatatggaattgcttcatcttgtaagagagtcaaggtttact----ggtgtgtggaaatagattaatgattctaat |
16142876 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattattcc |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| | ||||| |||| |
|
|
| T |
16142875 |
ctcagatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttattgccattaatctttgatgttttctattctcttattcttcc |
16142776 |
T |
|
| Q |
213 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagttannnnnnngtgaaagtatcactgctggaagtgtca |
312 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||| |||| ||||| ||||||||||| |
|
|
| T |
16142775 |
tctgcatagtatttgaaaacctagctagttttcaatgcacaaattttggtttttgtattcaagttattttttggtgagagtagcactgttggaagtgtca |
16142676 |
T |
|
| Q |
313 |
ctttagttccaatgttgtactgttgttgtcggcaaatga |
351 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
16142675 |
ctttagttctaatgttgtactgttgttgttcgcaaatga |
16142637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 1444556 - 1444890
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
1444556 |
aaaatatatagtatgattttatagtatatggaattgcttcatcttgtaagagagccaaagtttact----ggtgtgtggaagtagattaatgattctaat |
1444651 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattattcc |
212 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |
|
|
| T |
1444652 |
ctcagatgcatcatgcaactgatttgttttaatcttatgatggtttaagttatgttttcttgccattaacctttgatgttttcaattctcttattcttcc |
1444751 |
T |
|
| Q |
213 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagttannnnnnngtgaaagtatcactgctggaagtgtca |
312 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||| |||| ||||||||||||||||| |||| |||| ||||| ||||||||||| |
|
|
| T |
1444752 |
tctgcatagtgtttgaaaacctagctagttttcaagacacaaaatttgattttggtattcaagttattttttggtgagagtagcactgttggaagtgtca |
1444851 |
T |
|
| Q |
313 |
ctttagttccaatgttgtactgttgttgtcggcaaatga |
351 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
1444852 |
ctttagttccaatgttgtactattgttgtccgcaaatga |
1444890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 34493216 - 34493264
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaa |
61 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||||| |||||| |
|
|
| T |
34493216 |
aaaatatatagtatgattttatagagtattgaattgtttcattttgtaa |
34493264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 12179658 - 12179919
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12179658 |
aaaatatatagtatgattttatagtatatgaaattgcttcatcttgtaagagagccaaagtttact----ggtgtgtggaagtagattaatgattctaat |
12179753 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccattaacctttgatgttttccattatattattattcc |
212 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||| |||| |
|
|
| T |
12179754 |
ctcagatgcatcatgcaactagtttgttttaatcttatggtggtttaagttatgttttcttgccattatcctttgatgttttctattctcttattcttcc |
12179853 |
T |
|
| Q |
213 |
tctgcatagtgtttgaaaacctagataattttcaatgcacaaattttggttttggtattcaagtta |
278 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12179854 |
tctgcatagtgtttgaaaacctagctagttttcaatgcataaattttggttttggtattcaagtta |
12179919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 12180222 - 12180287
Alignment:
| Q |
286 |
gtgaaagtatcactgctggaagtgtcactttagttccaatgttgtactgttgttgtcggcaaatga |
351 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||||| |||||| || ||||| |||||||| |
|
|
| T |
12180222 |
gtgagagtagcactgttggaagtgtcactttagttccaatgatgtactatttttgtccgcaaatga |
12180287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 21351008 - 21350850
Alignment:
| Q |
13 |
aaaatatatagtatgattttatagcatatggaattgcttcatcttgtaagagagccaaggtttactagtgtgtgtgtggaagtagattaatgtttctaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
21351008 |
aaaatatatagtatgattttatagtatatggaattgcttcatcttgtaagagagccaaagtttactagtgtgtg----gaagtagattaatgattctaat |
21350913 |
T |
|
| Q |
113 |
ctcaaatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgc |
175 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21350912 |
ctcatatgcatcatgcaactggtttgttttaatcttatggtggtttaagttatgttttcttgc |
21350850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 11340349 - 11340411
Alignment:
| Q |
117 |
aatgcatcatgtaactggtttgttttaatcttctggtggtttaagttatgttttcttgccatt |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||| |
|
|
| T |
11340349 |
aatgcatcatgtaactggtttgttttaatctccacgtggttcaagttatgttttcctgccatt |
11340411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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