View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_30 (Length: 356)
Name: NF13734_low_30
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 38821925 - 38821583
Alignment:
| Q |
17 |
agttaccatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagttctt------------attatcgttaccctaaattgga |
104 |
Q |
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| T |
38821925 |
agttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagtcatttgctagaatttcaatttcgttaccctaaattgga |
38821826 |
T |
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| Q |
105 |
tagttagtagtattggctctatgtgtgaatcttcagttctaattgtagcaatattttaatctgaatactaat-------gttgcaatttaacactttgtt |
197 |
Q |
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| T |
38821825 |
tagttagtagtatttgctctatgtgtgaatcttcagttctaattgtagcactattttaatctgaatactaatcagtaatgttgcaatttaactctttgtt |
38821726 |
T |
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| Q |
198 |
tacattttgaagatagatctttgaatttgttatttctttatttcccatat---actatttgttatcctgttacatagagtacataatactctgtcaaaaa |
294 |
Q |
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| T |
38821725 |
tacattttgaagatagacctttgaatttgttatttctttatttcccatatactactatttgttattctgttacatagagtac---atactctgtcaaaaa |
38821629 |
T |
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| Q |
295 |
taaattatagaataatatgaacatttaaaaccttattgttgaagac |
340 |
Q |
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| T |
38821628 |
taaattatagaataatatgaacatttaaaaccatattgttgaagac |
38821583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 38799592 - 38799663
Alignment:
| Q |
17 |
agttaccatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagttcttattatc |
88 |
Q |
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| T |
38799592 |
agttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagttcttattatc |
38799663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 38807093 - 38807155
Alignment:
| Q |
17 |
agttaccatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagtt |
79 |
Q |
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| T |
38807093 |
agttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttagtt |
38807155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 43479704 - 43479641
Alignment:
| Q |
18 |
gttaccatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagttct |
81 |
Q |
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| T |
43479704 |
gttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttagttct |
43479641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 3929992 - 3929932
Alignment:
| Q |
17 |
agttaccatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag |
77 |
Q |
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|||||| || ||||| ||||| ||||| |||||||||||||||||||| || ||||||||| |
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| T |
3929992 |
agttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag |
3929932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13576446 - 13576505
Alignment:
| Q |
18 |
gttaccatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag |
77 |
Q |
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| T |
13576446 |
gttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttag |
13576505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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