View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_33 (Length: 338)
Name: NF13734_low_33
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_33 |
 | |
|
| [»] scaffold0862 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 13010230 - 13010530
Alignment:
| Q |
20 |
ataagacatctcgtgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaatt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13010230 |
ataagacttctcgtgcaagagcatgggcgctaccgtttccttgacgcctagtaaaaacaactacaaagtcgttatagtgatcaagtaaggttctacaatt |
13010329 |
T |
|
| Q |
120 |
ttggatgatcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcct |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
13010330 |
ttggacaatcgaaccatactcagagagattcatcttaccgttgtgcacatcatccacaaccattttacaatcaagcttaaaaatcacattgtggtatcgt |
13010429 |
T |
|
| Q |
219 |
actgaagaaatccactgaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatg |
318 |
Q |
| |
|
| |||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
13010430 |
aatgaagaaatccattgaatgccttcatacaaaccccaagcttcaccctccgctattgtaatcacaacctcacaataagttgtcaaagctgcaacaaatg |
13010529 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
|
|
| T |
13010530 |
t |
13010530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 34693142 - 34692896
Alignment:
| Q |
28 |
tctcgtgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtc-gttatagtgatcaagtaaggttctacaattttggatg |
126 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
34693142 |
tctcgtacaagagcatgaacgctactgtttgcttgacgccaagtaaaaacaactacaaagtttgttatagtgatcaagtaagatcctacaattttagata |
34693043 |
T |
|
| Q |
127 |
atcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaag |
225 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34693042 |
atcgaatcatactcagcgagattcatcttactattgcgcacatcatccacaaccattttacaatcaagctcaaaaatcacattgtggtatcctaacgaag |
34692943 |
T |
|
| Q |
226 |
aaatccactgaatgccgtcgtacaaaccccaagcttcacccttcgct |
272 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
34692942 |
aaatccatcgaatgccttggtacaaaccccaagcttcaccctccgct |
34692896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 17160390 - 17160426
Alignment:
| Q |
45 |
ggcgctaccgtttgcttgacgcctagtaaaaacaact |
81 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
17160390 |
ggcgcttccgtttgcttgacgcctagtaaagacaact |
17160426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 28 - 317
Target Start/End: Complemental strand, 14810386 - 14810096
Alignment:
| Q |
28 |
tctcgtgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatga |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||| | |
|
|
| T |
14810386 |
tctcgtgcaagagcatgagcgctaccgtttgcctgacgcctagtaaaaacaactacaaagttgttatagtgatcaagtaaggttctataactttggataa |
14810287 |
T |
|
| Q |
128 |
tcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaaga |
226 |
Q |
| |
|
| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
14810286 |
ttgaaccatactcagagagattcttcttacgatcgtgcacatcatccacaaccattttacaatcaagctcaaaaatgacattgtggtatcctaatgaaga |
14810187 |
T |
|
| Q |
227 |
aatccactgaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaat |
317 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| || |||||||| |
|
|
| T |
14810186 |
aatccactgaatgccttggtacaaaccccaagcttcacccttcgctattgtcatcacagcctcacaataagttgtcaaggcaacaacaaat |
14810096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 36 - 319
Target Start/End: Complemental strand, 20700249 - 20699966
Alignment:
| Q |
36 |
aagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaacca |
135 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| || |||||| |
|
|
| T |
20700249 |
aagaacatgagcactaccgtttgcttgacgcctagtaaaaacaactacaaagtcgttatagtgatcaagtaaggttcta-gagtttggataattgaacca |
20700151 |
T |
|
| Q |
136 |
tactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatccact |
234 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||| |||| |||||| |||| |||||||||||| | |
|
|
| T |
20700150 |
tactcagaaagattcatcttactattgtgcacatcatctgcaaccattttacaatcaagctcaaaaatgacatcgtggtaccctaatgaagaaatccatt |
20700051 |
T |
|
| Q |
235 |
gaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt |
319 |
Q |
| |
|
||||| | | ||||||| ||||||||||||||| | ||||| | ||| || ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
20700050 |
gaatgtcttggtacaaatcccaagcttcaccctccactattatcatcgcagcctcacaataaattgtcaaagcagcaacaaatgt |
20699966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 18587833 - 18588107
Alignment:
| Q |
29 |
ctcgtgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgat |
128 |
Q |
| |
|
||||| |||||||||| |||||| |||||| || |||||||||||||||||||| |||||||| |||||||||| |||||||||| || ||||||| || |
|
|
| T |
18587833 |
ctcgtacaagagcatgagcgctatcgtttgttttacgcctagtaaaaacaactacaaagtcgtaatagtgatcacataaggttctaaaaatttggataat |
18587932 |
T |
|
| Q |
129 |
cgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaa |
227 |
Q |
| |
|
|||| |||||| ||||||||| || ||||||||| ||||||||||||| ||| |||| ||||| |||| |||| ||| ||||||||||||| |||||| |
|
|
| T |
18587933 |
cgaatcatacttagagagattaat-ttactgttgcgcacatcatccacgacccttttacaatctagctaaaaattcatcttgtggtatcctaacgaagaa |
18588031 |
T |
|
| Q |
228 |
atccactgaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtca |
303 |
Q |
| |
|
||||| |||||||| | |||||||||| |||||| || | |||||||| |||||| |||||||||||||||||| |
|
|
| T |
18588032 |
atccattgaatgccttggtacaaaccctaagcttatccatctgctattgtcatcacagcctcataataagttgtca |
18588107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 28 - 319
Target Start/End: Original strand, 29575489 - 29575781
Alignment:
| Q |
28 |
tctcgtgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatga |
127 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29575489 |
tctcgtgcaagagcatgagcgctaccatttgcttgacgcctagtaaaaacaactacaaagtcgttatagtgatcaagtaaggttctacagttttggatga |
29575588 |
T |
|
| Q |
128 |
tcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaaga |
226 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||| ||||||||||| |||| |||||| |
|
|
| T |
29575589 |
ttgaaccatactcagagagattcatcttactattgtgcacatcatctacaaccattttacaatccagctcaaaaatgacattgtggtaccctaatgaaga |
29575688 |
T |
|
| Q |
227 |
aatccactgaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt |
319 |
Q |
| |
|
|||||| |||||||| | ||| ||||||||||||||||||| ||||| | | |||||| ||||| | |||| ||||||||| |||| |||||| |
|
|
| T |
29575689 |
aatccattgaatgccttggtataaaccccaagcttcaccctccgctactttcatcacagcctcacagtaagctgtcaaagcagcaataaatgt |
29575781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 312
Target Start/End: Complemental strand, 26000750 - 26000522
Alignment:
| Q |
84 |
aaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatt |
183 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
26000750 |
aaagtctttaaagtgatcaagtaaggttctaaaattttggagaatcgaac-atactgagagagattaagcttattgttgtgcacatcatccacaaccatt |
26000652 |
T |
|
| Q |
184 |
tt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatccactgaatgccgtcgtacaaaccccaagcttcacccttc-gctattgtaatc |
281 |
Q |
| |
|
|| ||||| |||| ||||||||| || | |||||||| ||||||||| | | |||| | | |||||||||||| |||||||| | ||||||| ||| |
|
|
| T |
26000651 |
ttacaatccagctcaaaaatcaccttatcgtatcctaaggaagaaatcgattcaatgtcttaatacaaaccccaa-cttcacccccctactattgtcatc |
26000553 |
T |
|
| Q |
282 |
acaacctcataataagttgtcaaagctgcaa |
312 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||| |
|
|
| T |
26000552 |
acaacctcacaatatgttgtcatagcagcaa |
26000522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 18657090 - 18657333
Alignment:
| Q |
30 |
tcgtgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatc |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
18657090 |
tcgtgcaagagcatgagcgctaccgtttgcttgacgcctagtaaaaacaactacaaattcgttataatgattaagtaaggttctacaattttggatgatc |
18657189 |
T |
|
| Q |
130 |
gaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaa |
228 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
18657190 |
gaaccatactcagagatattcatcttactaatgtacacatcatccacaaccattttacaatcaagctcaaaaatgacattgtggtatcctaatgaagaaa |
18657289 |
T |
|
| Q |
229 |
tccactgaatgccgtcgtacaaaccccaagcttcacccttcgct |
272 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
18657290 |
tccattgaatgccttggtacaaaccccaagcttcaccctccgct |
18657333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 3230591 - 3230524
Alignment:
| Q |
65 |
gcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaa |
132 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
3230591 |
gcctaataaaaacagctacaaagtcgttatagtgatcaagtaaagttgtacaattttggataatcgaa |
3230524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 913948 - 914082
Alignment:
| Q |
84 |
aaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatt |
183 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||| ||||||||||| ||| ||||||| |||| | |||||||||||||||| ||||||||| |
|
|
| T |
913948 |
aaagtcgttgtagtgatcaagtaaagttgcacaattttggataatcgaaccatattcaaagagattaatctaattgttgtgcacatcatctacaaccatt |
914047 |
T |
|
| Q |
184 |
tt-caatcaagcttaaaaatcacattgtggtatcc |
217 |
Q |
| |
|
|| ||||| | || |||||||| || |||||||| |
|
|
| T |
914048 |
ttacaatccaactcaaaaatcatcttttggtatcc |
914082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 11737762 - 11737801
Alignment:
| Q |
35 |
caagagcatgggcgctaccgtttgcttgacgcctagtaaa |
74 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
11737762 |
caagagcatgagcgcttccgtttgcttgacgcctagtaaa |
11737801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 9680323 - 9680275
Alignment:
| Q |
33 |
tgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaact |
81 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
9680323 |
tgcaagagcatgagcgcttccgtttgcttgacgcctagtaaacacaact |
9680275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 41687233 - 41687281
Alignment:
| Q |
33 |
tgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaact |
81 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
41687233 |
tgcaagagcatgagcgcttccgtttgcttgacgcctagtaaacacaact |
41687281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0862 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0862
Description:
Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 4514 - 4464
Alignment:
| Q |
269 |
cgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt |
319 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
4514 |
cgctattgtcatcacaacctcgcaataagttgttaaagcagcaacaaatgt |
4464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 14835587 - 14835621
Alignment:
| Q |
31 |
cgtgcaagagcatgggcgctaccgtttgcttgacg |
65 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
14835587 |
cgtgcaagagcatgggcgcttccgtttgcttgacg |
14835621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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