View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_34 (Length: 334)
Name: NF13734_low_34
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_34 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 28725615 - 28725308
Alignment:
| Q |
21 |
ttgactaatttttgattacattttggaacagagggggtactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatctctacaaaatttt |
120 |
Q |
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||||| |||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28725615 |
ttgaccaatttttgcttacattttgggacagaagggatactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatccctacaaaatttt |
28725516 |
T |
|
| Q |
121 |
aaaattgcatacatgaaatttttgtaaggataaaaacatgtcttctgttttatcggaacnnnnnnnnnnnnnnnnnnnnnnnnntttcaagtctttagac |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
28725515 |
aaaattgtgtacatgaaatttttgtaaggataaaaacatgtcttttgttttatcggaacaaaaaaacaaaacttgattaaaaaatttcaagtcttcagac |
28725416 |
T |
|
| Q |
221 |
catctcaattttctcgtaactattttttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacaca |
320 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28725415 |
catctcaattttctcgtttctattttttcattcttaggtcccagctcaataatgcaattcgagaagggggtattccattcaacatggttcatggcacaca |
28725316 |
T |
|
| Q |
321 |
tgcctttg |
328 |
Q |
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|||||||| |
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| T |
28725315 |
tgcctttg |
28725308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 28710641 - 28710534
Alignment:
| Q |
221 |
catctcaattttctcgtaactattttttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacaca |
320 |
Q |
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||||||||||||||||| || |||||||||||||||| | |||| || ||| |||||||| |||||||| | |||||||||| |||||||||||||| |
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| T |
28710641 |
catctcaattttctcgtttctgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacaca |
28710542 |
T |
|
| Q |
321 |
tgcctttg |
328 |
Q |
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|||||||| |
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| T |
28710541 |
tgcctttg |
28710534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 28717988 - 28717881
Alignment:
| Q |
221 |
catctcaattttctcgtaactattttttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacaca |
320 |
Q |
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||||||||||||||||| || |||||||||||||||| | |||| || ||| |||||||| |||||||| | |||||||||| |||||||||||||| |
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| T |
28717988 |
catctcaattttctcgtttctgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacaca |
28717889 |
T |
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| Q |
321 |
tgcctttg |
328 |
Q |
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|||||||| |
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| T |
28717888 |
tgcctttg |
28717881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 28699580 - 28699499
Alignment:
| Q |
247 |
ttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacacatgcctttg |
328 |
Q |
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|||||||||||||| | || || |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
28699580 |
ttcattcttaggtctgaccttaagaatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttg |
28699499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 28643293 - 28643229
Alignment:
| Q |
263 |
agctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacacatgccttt |
327 |
Q |
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|||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
28643293 |
agcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt |
28643229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 28652245 - 28652181
Alignment:
| Q |
263 |
agctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacacatgccttt |
327 |
Q |
| |
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|||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
28652245 |
agcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt |
28652181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 28710784 - 28710686
Alignment:
| Q |
56 |
ggtactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatctctacaaaattttaaaattgcatacatgaaatttttgtaaggataaaa |
155 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| ||||||| ||| ||| ||||||| ||||||||| |||||||||||||||| |
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| T |
28710784 |
ggtactatacaaatattaatttttcggtacttgaaaatttaaaaattttgtctatac--------aaaattgtgtacatgaaaattttgtaaggataaaa |
28710693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 28718131 - 28718033
Alignment:
| Q |
56 |
ggtactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatctctacaaaattttaaaattgcatacatgaaatttttgtaaggataaaa |
155 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| ||||||| ||| ||| ||||||| ||||||||| |||||||||||||||| |
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| T |
28718131 |
ggtactatacaaatattaatttttcggtacttgaaaatttaaaaattttgtctatac--------aaaattgtgtacatgaaaattttgtaaggataaaa |
28718040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 28625635 - 28625555
Alignment:
| Q |
247 |
ttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacacatgccttt |
327 |
Q |
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|||||||||| |||| ||| || |||||||||||| |||| ||| | ||||||||||| ||||||||||||||||||||| |
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| T |
28625635 |
ttcattcttaagtccgggcttaagaatgcaattcgaaaaggcggtgtcccattcaacattgttcatggcacacatgccttt |
28625555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 28739356 - 28739289
Alignment:
| Q |
247 |
ttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatgg |
314 |
Q |
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|||||| |||||||| |||| ||||||||||||||| ||||||||| ||| ||||||| |||||||| |
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| T |
28739356 |
ttcatttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgg |
28739289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 6457 - 6554
Alignment:
| Q |
230 |
tttctcgtaactattttttcattcttaggtcccagctcaataatgcaattcgacaagggggtattccattcaacatggttcatggcacacatgccttt |
327 |
Q |
| |
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|||||||| |||||||| |||||||||||| || | ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
6457 |
tttctcgtttctatttttccattcttaggtctgagtttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt |
6554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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