View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_35 (Length: 329)
Name: NF13734_low_35
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 2326092 - 2326395
Alignment:
| Q |
11 |
catcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326092 |
catcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
2326191 |
T |
|
| Q |
111 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326192 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
2326291 |
T |
|
| Q |
211 |
ccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgct |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||| |
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| T |
2326292 |
ccagtcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggtgtaccctccgtcgtaacctcgcctctgagatgct |
2326391 |
T |
|
| Q |
311 |
tcat |
314 |
Q |
| |
|
|||| |
|
|
| T |
2326392 |
tcat |
2326395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 2329808 - 2330110
Alignment:
| Q |
12 |
atcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata |
111 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
2329808 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
2329907 |
T |
|
| Q |
112 |
tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcc |
211 |
Q |
| |
|
|||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||| |
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| T |
2329908 |
tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctgatcgtcctaaagcacttcc |
2330007 |
T |
|
| Q |
212 |
caatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgctt |
311 |
Q |
| |
|
|| | |||||||||| || |||||||||||||| |||||| ||||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||| |
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|
| T |
2330008 |
cactaacaaactcatgtccagcaaccagcacaatatcagctccgctttttatggaccaacatggcgtactctccgtcgtaacctcgcctccgagatgctt |
2330107 |
T |
|
| Q |
312 |
cat |
314 |
Q |
| |
|
||| |
|
|
| T |
2330108 |
cat |
2330110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 314
Target Start/End: Original strand, 2292934 - 2293221
Alignment:
| Q |
27 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagacctt |
126 |
Q |
| |
|
|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||||| |
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|
| T |
2292934 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgacctt |
2293033 |
T |
|
| Q |
127 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcat |
226 |
Q |
| |
|
|||||| ||| ||||| | ||||||||||||| | |||||||||||| ||||| ||||||| ||||| |||| ||| ||||| | | |||| | | |
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| T |
2293034 |
ccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctgatcgccctacagctcttcctacttccaaaatgtt |
2293133 |
T |
|
| Q |
227 |
atctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcat |
314 |
Q |
| |
|
|| |||||||| |||||||||| | |||||| |||||||||||||||||||||||| || ||||||| || ||||||||||||||| |
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|
| T |
2293134 |
gtccagcaaccaacacaacatcaacaccgcttattatggcccaacatggcgtacccttcgtcgtaaccttgcttccgagatgcttcat |
2293221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 314
Target Start/End: Original strand, 2320254 - 2320541
Alignment:
| Q |
27 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagacctt |
126 |
Q |
| |
|
|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||||| |
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|
| T |
2320254 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgacctt |
2320353 |
T |
|
| Q |
127 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcat |
226 |
Q |
| |
|
|||||| |||| ||||| ||||||||| ||||| | |||||||||||| ||| | ||||||| ||||| || ||| ||||| | | || | | | |
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|
| T |
2320354 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccgtagctcttcctacttccataatgtt |
2320453 |
T |
|
| Q |
227 |
atctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcat |
314 |
Q |
| |
|
|| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||| || ||||||||||||||| |
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|
| T |
2320454 |
gtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatgcttcat |
2320541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 314
Target Start/End: Original strand, 2302558 - 2302840
Alignment:
| Q |
32 |
gctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatt |
131 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||||| |
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|
| T |
2302558 |
gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt |
2302657 |
T |
|
| Q |
132 |
tacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatatcta |
231 |
Q |
| |
|
| |||| |||| ||||||||||||||| | |||||||||||| ||| ||| ||| ||||| |||||||| |||| | | |||| | | || | |
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|
| T |
2302658 |
ttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactcagacatctactctgatcgccctaaagcttttcctacttccaaaatgttgtcca |
2302757 |
T |
|
| Q |
232 |
gcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcat |
314 |
Q |
| |
|
||||||| |||||||||||| ||| |||||||||||||||||||||||||||| || ||||||| || |||||||| |||||| |
|
|
| T |
2302758 |
gcaaccaacacaacatcagctccggtttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatacttcat |
2302840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 2350125 - 2350410
Alignment:
| Q |
29 |
atggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttcc |
128 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| ||| || ||| | | | |||||||| |
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|
| T |
2350125 |
atggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttcc |
2350224 |
T |
|
| Q |
129 |
atttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatat |
228 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||||||||||||| ||| | ||||||| ||||| |||| ||| ||||||| |||| |||| | |
|
|
| T |
2350225 |
attttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctgatcgccctagagctcttcccaccgccaaaatcatct |
2350324 |
T |
|
| Q |
229 |
ctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcat |
314 |
Q |
| |
|
| |||||||| |||||||||||| ||||||||||||| ||||||||||| ||||| || | ||||| || || |||||||||||| |
|
|
| T |
2350325 |
ccagcaaccaacacaacatcagctccgctttttatggtgcaacatggcgtgccctccgtcgaaaccttgcttctgagatgcttcat |
2350410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 27 - 314
Target Start/End: Original strand, 2309265 - 2309552
Alignment:
| Q |
27 |
caatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagacctt |
126 |
Q |
| |
|
|||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || ||||| |
|
|
| T |
2309265 |
caattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaacctt |
2309364 |
T |
|
| Q |
127 |
ccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcat |
226 |
Q |
| |
|
|||||| |||| ||||| ||||||||| ||||| | |||||||||||| ||| | | |||| ||||| |||| ||| ||||| | | |||| | | |
|
|
| T |
2309365 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccataatctctgatcgccctacagctcttcctacttccaaaatgtt |
2309464 |
T |
|
| Q |
227 |
atctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcat |
314 |
Q |
| |
|
|| |||||||| |||||||||| | |||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| |
|
|
| T |
2309465 |
gtccagcaaccaacacaacatcaacaccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgctttcgagatgcttcat |
2309552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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