View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_36 (Length: 323)
Name: NF13734_low_36
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 33223621 - 33223315
Alignment:
| Q |
1 |
atgcaatatcaaacccttctttctccaacactttgtctttccaattctgaaactcaaccaaagtttgataagccggctcgccgtgaccaagaagtttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223621 |
atgcaatatcaaacccttctttctccaacactttgtctttccaattctgaaactcaaccaaagtttgataagccggctcgccgtgaccaagaagtttaat |
33223522 |
T |
|
| Q |
101 |
gctatatcctttgcttagaataatccatccttgtggatcacgtctgaggcaaaacaagtctttcactattttttgaatctcgcaatccacagtctcttga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33223521 |
gctatgtcctttgcttagaataatccatccttgtggatcacgtctgaggcaaaacaagtctttcactatttcttgaatcttgcaatccacagtctcttga |
33223422 |
T |
|
| Q |
201 |
tgcttcttgttttgtttctttctttctatacccatccagaaacttggaacacggttaggatcatctttgcccacttgataattctctattataacgtctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223421 |
tgcttcttgttttgtttctttctttctatacccatccagaaacttggaacacggttaggatcatctttgcccacttgataattctctattataacgtctg |
33223322 |
T |
|
| Q |
301 |
cacgctt |
307 |
Q |
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||||||| |
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| T |
33223321 |
cacgctt |
33223315 |
T |
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