View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_37 (Length: 322)
Name: NF13734_low_37
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 6394643 - 6394355
Alignment:
| Q |
20 |
acttctctaagaaatttcctttttaaaatgtcaatcttacaaatttaaaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatt |
119 |
Q |
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| T |
6394643 |
acttctctgagaaatttcctttttaaaatgtca-tcttacaaatttaaaaggctaggccatggccggatggtggatttttgacaaccattttagtcaatt |
6394545 |
T |
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| Q |
120 |
tgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaag |
219 |
Q |
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| T |
6394544 |
tgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaag |
6394445 |
T |
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| Q |
220 |
taaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct |
309 |
Q |
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| T |
6394444 |
taaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct |
6394355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 14820311 - 14820140
Alignment:
| Q |
102 |
caaccatttcagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaac |
201 |
Q |
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| T |
14820311 |
caaccattgtagtcaatttgtaaaggaatgctgatgcctaatatggcggcgccaaaagtcgcaactcagtggtcaaacttaatttatattttgattcaac |
14820212 |
T |
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| Q |
202 |
ttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat |
273 |
Q |
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| T |
14820211 |
ttgaaagctaatatatagtaaataatgtgtatagcttatgaattgattaatgatatgtgtttgaagtatgat |
14820140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 6426109 - 6426035
Alignment:
| Q |
200 |
acttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgata |
274 |
Q |
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| T |
6426109 |
acttgaaagctaatatgaacaaaataaggcatatagcttatgaattgactaatgatatgtgtttgaagtgtgata |
6426035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 14820127 - 14820083
Alignment:
| Q |
262 |
ttgaagtatgataactcaagtatgtttaacttgataatatgtgta |
306 |
Q |
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| T |
14820127 |
ttgaagtatgaaaactctagaatgtttaacttgatattatgtgta |
14820083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 309
Target Start/End: Complemental strand, 49218976 - 49218728
Alignment:
| Q |
67 |
aaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaat-aatgccgatgcccaacatggcagcgtcataagtcgcaa |
165 |
Q |
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| T |
49218976 |
aaaggctacgccatggtaggatgacggatgtttaacaaccattgcagtcaatttatgattggaatgccgatgcccaccatggcagcgctatatgtcgcaa |
49218877 |
T |
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| Q |
166 |
ctctgcagtcaaacttactttgtattttaatccaacttgaaagttaata-----tgaagtaaataaggcatatggcatatgaattgattaatgatatgtg |
260 |
Q |
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| T |
49218876 |
ttcagctgtcaagcataatttgaatttttattcaacttgaaagctgatatgaagtgaagtaaataaggcatatagcttatgaattgattaatgatatgta |
49218777 |
T |
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| Q |
261 |
tttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct |
309 |
Q |
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|||| ||||||||||||| || |||||||||||||||||||| |||| |
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| T |
49218776 |
tttggggtatgataactcatataagtttaacttgataatatgtgcacct |
49218728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 49219101 - 49219072
Alignment:
| Q |
20 |
acttctctaagaaatttcctttttaaaatg |
49 |
Q |
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| T |
49219101 |
acttctctaagaaatttcctttttaaaatg |
49219072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 15092471 - 15092515
Alignment:
| Q |
20 |
acttctctaagaaatttcctttttaaaatgtcaatcttacaaattt |
65 |
Q |
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| T |
15092471 |
acttctctgagaaatttcctttttaaaatgtc-atctttcaaattt |
15092515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 15092659 - 15092704
Alignment:
| Q |
188 |
tattttaatccaacttgaaagttaatatgaagtaaataaggcatat |
233 |
Q |
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| T |
15092659 |
tattttgattcaacttgaaagctaatataaagtaaataaggcatat |
15092704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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