View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_39 (Length: 305)
Name: NF13734_low_39
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 34878232 - 34877984
Alignment:
| Q |
10 |
gcagagagatggataccgcggtagaacaatattgagctgcaaatgagtgtagttgagtcaaatttgacacaattaacctctactcaacnnnnnnnttagt |
109 |
Q |
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| T |
34878232 |
gcagagagatggataccgcggtagaacaatattgagctgcaaatgagtgtagttgagtcaaatttgacacaattaacctctactcaac--aaaaattagt |
34878135 |
T |
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| Q |
110 |
tcaactgaaaacacgacttgagttcgacattggttctttaattttttaaagaaattaaattagcctaccta-----aatggcatcggaattaaacttaaa |
204 |
Q |
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| T |
34878134 |
tcaactgaaaactcgacttgagttcgacattggttcattattttttaaaagaaactaaactaacctacctaaatgtaatgatatcggaattaaacttaaa |
34878035 |
T |
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| Q |
205 |
acatcaaagaagaagaaactctcaagtctcaaactaatatcatcaaaccaa |
255 |
Q |
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| T |
34878034 |
acatcaaagaagaagagactctcaagtctcaaactaatatcaccaaaccaa |
34877984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 32880822 - 32880790
Alignment:
| Q |
151 |
ttttttaaagaaattaaattagcctacctaaat |
183 |
Q |
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| T |
32880822 |
ttttttaaagaagttaaattagcctacctaaat |
32880790 |
T |
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