View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_low_4 (Length: 621)

Name: NF13734_low_4
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_low_4
NF13734_low_4
[»] scaffold0781 (2 HSPs)
scaffold0781 (268-607)||(5582-5921)
scaffold0781 (1-161)||(5316-5474)
[»] chr6 (12 HSPs)
chr6 (268-607)||(2217126-2217465)
chr6 (1-161)||(2216859-2217018)
chr6 (1-67)||(24798903-24798968)
chr6 (1-66)||(24690627-24690691)
chr6 (1-67)||(11644028-11644094)
chr6 (1-67)||(24690356-24690421)
chr6 (1-73)||(18495013-18495084)
chr6 (1-63)||(11643754-11643815)
chr6 (1-67)||(18494735-18494799)
chr6 (1-49)||(24798643-24798691)
chr6 (1-51)||(9955650-9955700)
chr6 (1-54)||(9954820-9954873)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-67)||(22986-23051)
[»] chr4 (11 HSPs)
chr4 (1-67)||(50509409-50509474)
chr4 (1-67)||(39161289-39161354)
chr4 (1-46)||(55173355-55173400)
chr4 (9-67)||(47096801-47096858)
chr4 (1-67)||(55173534-55173599)
chr4 (1-46)||(39161568-39161613)
chr4 (1-67)||(47097078-47097143)
chr4 (1-65)||(37996068-37996131)
chr4 (562-607)||(1293533-1293578)
chr4 (18-67)||(2623449-2623497)
chr4 (390-446)||(37335336-37335392)
[»] chr8 (11 HSPs)
chr8 (1-67)||(13884490-13884555)
chr8 (1-67)||(13884769-13884834)
chr8 (1-59)||(2554131-2554188)
chr8 (5-67)||(29714543-29714604)
chr8 (1-67)||(29714823-29714888)
chr8 (1-67)||(42126665-42126730)
chr8 (1-67)||(11867963-11868027)
chr8 (1-45)||(43416285-43416329)
chr8 (1-67)||(42126383-42126448)
chr8 (557-607)||(22798391-22798441)
chr8 (1-51)||(26745279-26745329)
[»] chr7 (10 HSPs)
chr7 (1-67)||(28715923-28715988)
chr7 (2-67)||(6474562-6474626)
chr7 (1-67)||(41985911-41985976)
chr7 (1-49)||(30862236-30862284)
chr7 (1-68)||(6474280-6474346)
chr7 (1-49)||(47373743-47373791)
chr7 (13-67)||(22226665-22226718)
chr7 (1-67)||(41986189-41986254)
chr7 (1-65)||(28715645-28715708)
chr7 (1-51)||(38408181-38408231)
[»] chr2 (14 HSPs)
chr2 (5-67)||(16973065-16973126)
chr2 (1-67)||(16973345-16973410)
chr2 (1-67)||(2916379-2916444)
chr2 (1-50)||(38982838-38982887)
chr2 (1-66)||(44594519-44594583)
chr2 (1-49)||(24125688-24125736)
chr2 (1-49)||(40987675-40987723)
chr2 (1-67)||(44594249-44594315)
chr2 (1-67)||(13559582-13559647)
chr2 (1-46)||(2916658-2916703)
chr2 (1-67)||(11533726-11533791)
chr2 (1-67)||(38982558-38982623)
chr2 (1-42)||(24126204-24126245)
chr2 (1-62)||(40987927-40987987)
[»] chr1 (9 HSPs)
chr1 (1-67)||(19056151-19056216)
chr1 (1-66)||(37189629-37189693)
chr1 (1-67)||(10824650-10824715)
chr1 (3-67)||(19056434-19056497)
chr1 (1-67)||(22683142-22683207)
chr1 (1-66)||(18844461-18844525)
chr1 (1-67)||(18844729-18844795)
chr1 (1-67)||(15825802-15825865)
chr1 (1-67)||(37189369-37189433)
[»] chr3 (10 HSPs)
chr3 (1-67)||(51663531-51663596)
chr3 (1-65)||(46003251-46003314)
chr3 (1-67)||(40244626-40244691)
chr3 (5-67)||(40244873-40244934)
chr3 (1-66)||(46003529-46003593)
chr3 (1-65)||(40364238-40364301)
chr3 (1-67)||(20538215-20538280)
chr3 (1-48)||(40364060-40364107)
chr3 (1-67)||(51663251-51663316)
chr3 (1-49)||(20537944-20537992)
[»] chr5 (2 HSPs)
chr5 (4-67)||(21249363-21249425)
chr5 (16-66)||(21249629-21249678)


Alignment Details
Target: scaffold0781 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 268 - 607
Target Start/End: Original strand, 5582 - 5921
Alignment:
Q  268 aatgtgtgcatgtatgagcatgtccttgtaataatattaaataatatatatgttgccctcaccactcaaaatttcaacgtctatatcattgatttcatga 367  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5582 aatgtgtgtatgtatgagcatgtgcttgtaataatatgaaataatatatatgttgccctcaccactcaaaatttcaa-gtctatatcattgatttcatga 5680  T
Q  368 ttttattttgtc-aacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatataccaccataatatctcac 466  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5681 ttttactttgtcgaacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatataccaccataatatctcac 5780  T
Q  467 ctccaatgatctaaccgatnnnnnnnttgttctctttaggtatcatgacatgattctcaaggtagttaatggggggtgcagatcctctccatttctttag 566  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  5781 ctccaatgatctaaccgataaaaaaattgttctctttaggtatcatgacatgattctcgaggtagttaatggggggtgcagatcctctccatttccttag 5880  T
Q  567 aataaattgttacggaagatttcaacaaaacaccatgtttc 607  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5881 aataaattgttacggaagatttcaacaaaacaccatgtttc 5921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 5316 - 5474
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagcaaaatataaaaagacaacacatagcgaaagata 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||| ||||| |    
T  5316 aaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagccaaatataaaaagacaacacatagcaaaagaca 5414  T
Q  101 cttctagccacacttctcatacccaaattgtaatatactataaaattatttgtaaaagaat 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  5415 cttctagccacacttctcataccaaaattgtaatatactataaaatta-ttgtaaaagaat 5474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 268 - 607
Target Start/End: Original strand, 2217126 - 2217465
Alignment:
Q  268 aatgtgtgcatgtatgagcatgtccttgtaataatattaaataatatatatgttgccctcaccactcaaaatttcaacgtctatatcattgatttcatga 367  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2217126 aatgtgtgtatgtatgagcatgtgcttgtaataatatgaaataatatatatgttgccctcaccactcaaaatttcaa-gtctatatcattgatttcatga 2217224  T
Q  368 ttttattttgtc-aacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatataccaccataatatctcac 466  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2217225 ttttactttgtcgaacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatataccaccataatatctcac 2217324  T
Q  467 ctccaatgatctaaccgatnnnnnnnttgttctctttaggtatcatgacatgattctcaaggtagttaatggggggtgcagatcctctccatttctttag 566  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  2217325 ctccaatgatctaaccgataaaaaaattgttctctttaggtatcatgacatgattctcgaggtagttaatggggggtgcagatcctctccatttccttag 2217424  T
Q  567 aataaattgttacggaagatttcaacaaaacaccatgtttc 607  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2217425 aataaattgttacggaagatttcaacaaaacaccatgtttc 2217465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 2216859 - 2217018
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagcaaaatataaaaagacaacacatagcgaaagata 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||| ||||| |    
T  2216859 aaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagccaaatataaaaagacaacacatagcaaaagaca 2216957  T
Q  101 cttctagccacacttctcatacccaaattgtaatatactataaaattatttgtaaaagaat 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2216958 cttctagccacacttctcataccaaaattgtaatatactataaaattatttgtaaaagaat 2217018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24798903 - 24798968
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||    
T  24798903 aaattatagttaggggatcaaattaagacaatcaattaatttaaggga-tcgggtgattgaataagc 24798968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24690627 - 24690691
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 66  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  24690627 aaattatagttagggaaccaaattaaaacaatcaattaagttaaggga-tcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11644028 - 11644094
Alignment:
Q  1 aaattatagttagggg-accaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  11644028 aaattatagttagggggaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 11644094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24690421 - 24690356
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||    
T  24690421 aaattatagtaaggggaccaaattgagacaatcaattaagttaagagac-cgggtgattgaataagc 24690356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18495013 - 18495084
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagcaaaata 73  Q
    |||||||||||| |||| |||||||| | ||||||||||||||||||||| || ||||||||||||| |||||    
T  18495013 aaattatagttaagggatcaaattaatataatcaattaagttaagggact-agatgattgaataagccaaata 18495084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11643815 - 11643754
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaat 63  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||| | |||||||||||    
T  11643815 aaattatagttaggggatcaaattgagacaatcaattaaattaagggac-cgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18494799 - 18494735
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||| ||||| |||||||| ||||||||||| |||||||||||| || ||||||||||||||    
T  18494799 aaattatagctaggg-accaaattgagacaatcaataaagttaagggac-catgtgattgaataagc 18494735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24798691 - 24798643
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac 49  Q
    |||||||||| ||||||||||||| | |||| |||||||||||||||||    
T  24798691 aaattatagtcaggggaccaaattgaaacaaccaattaagttaagggac 24798643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9955650 - 9955700
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 51  Q
    |||||||| |||||||||||| || | |||| |||||||||||||||||||    
T  9955650 aaattatatttaggggaccaatttgatacaaacaattaagttaagggactc 9955700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9954873 - 9954820
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcagg 54  Q
    |||||||| |||||||||||| ||   |||| ||||||||||||||||||||||    
T  9954873 aaattatatttaggggaccaatttggtacaaacaattaagttaagggactcagg 9954820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22986 - 23051
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22986 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac-cgggtgattgaataagc 23051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50509409 - 50509474
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  50509409 aaattatagttaggggaccaaattaagacaatcaattaagttaaggga-tcagatgattgaataagc 50509474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39161354 - 39161289
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||||    
T  39161354 aaattatagttaggggaccaaattaagacattcaattaagttaaagga-tcgggtgattgaataagc 39161289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 55173400 - 55173355
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagg 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  55173400 aaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 47096858 - 47096801
Alignment:
Q  9 gttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  47096858 gttaggggaccaaattgagataatcaattaagttaaggga-tcaggtgattgaataagc 47096801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 55173534 - 55173599
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||| | |||||||||||||||    
T  55173534 aaattatagttaggagatcaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 55173599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39161568 - 39161613
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagg 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  39161568 aaattatagttaggggaccaaattaaaacaatcaattaagttaagg 39161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 47097078 - 47097143
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||| || || | |||||||||||||    
T  47097078 aaattatagttagaggactaaattgagacaatcaattaagttaagaga-tcggatgattgaataagc 47097143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37996131 - 37996068
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 65  Q
    |||||||||||| ||||||||||| | ||||||| || | |||||||| ||||||||||||||||    
T  37996131 aaattatagttaagggaccaaattgaaacaatcattttaattaaggga-tcaggtgattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 607
Target Start/End: Original strand, 1293533 - 1293578
Alignment:
Q  562 tttagaataaattgttacggaagatttcaacaaaacaccatgtttc 607  Q
    ||||||||||||||||| |||| |||||| |||||||||| |||||    
T  1293533 tttagaataaattgttatggaaaatttcatcaaaacaccacgtttc 1293578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 2623449 - 2623497
Alignment:
Q  18 ccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||| |||||||||||||||||||||||| |  ||||||||||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggac-cgagtgattgaataagc 2623497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 37335392 - 37335336
Alignment:
Q  390 ttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatat 446  Q
    ||||||||||||| ||||||||| || | | |||| ||| |||||||||||||||||    
T  37335392 ttttcaaatagcatgaaactaacatgtagtctaactctcatggtgaagtggatatat 37335336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13884555 - 13884490
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  13884555 aaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 13884490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13884769 - 13884834
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||    
T  13884769 aaattatagttaggggactaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 13884834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2554131 - 2554188
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgatt 59  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  2554131 aaattatagttaggggatcaaattgagacaatcaattaagttaagggact-aggtgatt 2554188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 29714604 - 29714543
Alignment:
Q  5 tatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  29714604 tatagtttggggaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 29714543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29714823 - 29714888
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||  |||||||    
T  29714823 aaattatagttaagggaccaaattaaaacaatcaattaagttaagggac-caggtgatcaaataagc 29714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42126665 - 42126730
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||| | |||||||||||||||    
T  42126665 aaattatagttaggggatcaaattgagataatcaattaagttaagggac-cgggtgattgaataagc 42126730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11867963 - 11868027
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||| || |||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  11867963 aaattatagttaaggaaccaaattgagacaatcaattaagttaa-ggac-caggtgattgaataagc 11868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43416329 - 43416285
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaag 45  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  43416329 aaattatagttaggggattaaattaagacaatcaattaagttaag 43416285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42126448 - 42126383
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||| | | |||||| ||||||| |||||||||||||||| | |||||||||||||||    
T  42126448 aaattatagttagagaatcaaattgagacaattaattaagttaagggac-cgggtgattgaataagc 42126383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 607
Target Start/End: Complemental strand, 22798441 - 22798391
Alignment:
Q  557 atttctttagaataaattgttacggaagatttcaacaaaacaccatgtttc 607  Q
    |||| ||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  22798441 atttttttagaataaactgttatggaagatttcgtcaaaacaccatgtttc 22798391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26745329 - 26745279
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 51  Q
    |||||||| |||||||||||| |||  |||| |||||||||||||||||||    
T  26745329 aaattatatttaggggaccaatttagtacaaacaattaagttaagggactc 26745279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28715923 - 28715988
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  28715923 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac-cgggtaattgaataagc 28715988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 6474562 - 6474626
Alignment:
Q  2 aattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaaggga-tcgggtgattgaataagc 6474626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41985976 - 41985911
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||||||||    
T  41985976 aaattatagttaggggatcaaattgagacaatcaattaagttaagggact-gggtgattgaataagc 41985911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30862284 - 30862236
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30862284 aaattatagttaggggaccaaattcagacaatcaattaagttaagggac 30862236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 6474346 - 6474280
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagca 68  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||||    
T  6474346 aaattatagttaggggatcaaattgagacaatcaattaagttaaggga-tccggtaattgaataagca 6474280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47373743 - 47373791
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac 49  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  47373743 aaattataattaggggaccaaattgagacaatcaattaagttaagggac 47373791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 22226665 - 22226718
Alignment:
Q  13 ggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaaggga-tcaggtgattgaataagc 22226718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41986189 - 41986254
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||| || | |||||||||||||||    
T  41986189 aaattatagttaggggatcaaattgagacaaacaattaagttaaggaac-cgggtgattgaataagc 41986254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28715708 - 28715645
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 65  Q
    ||||||||||||||  |||||||||| ||||| |||||||||||||||| | |||||||||||||    
T  28715708 aaattatagttaggaaaccaaattaaaacaattaattaagttaagggac-cgggtgattgaataa 28715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38408181 - 38408231
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 51  Q
    |||||||| |||||||||||| || | |||| |||||||||||||||||||    
T  38408181 aaattatatttaggggaccaatttgatacaaacaattaagttaagggactc 38408231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 16973126 - 16973065
Alignment:
Q  5 tatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  16973126 tatagttaggggaccaaattaagacaatcaattaagttaagggac-cgggtgattgaataagc 16973065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16973345 - 16973410
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  16973345 aaattatagttaggggaccaaattgagacaatcaattaagttaagggac-catgtgattgaataagc 16973410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2916444 - 2916379
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| || || |||||||||||||||    
T  2916444 aaattatagttaggggatcaaattgagacaatcaattaagttaagaga-tcgggtgattgaataagc 2916379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38982838 - 38982887
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggact 50  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  38982838 aaattatagttaagggaccaaattgagacaatcaattaagttaagggact 38982887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44594519 - 44594583
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 66  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||| | ||||||||||||||    
T  44594519 aaattatagttaggggaccaaattgagacaatcaattaaattaaaggac-cgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24125736 - 24125688
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac 49  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  24125736 aaattatagttaggggatcaaattgagacaatcaattaagttaagggac 24125688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40987723 - 40987675
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac 49  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  40987723 aaattatagttagggaaccaaattgagacaatcaattaagttaagggac 40987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44594315 - 44594249
Alignment:
Q  1 aaattatagttagggg-accaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  44594315 aaattatagttagggacaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 44594249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13559582 - 13559647
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||| | | |||||||||||||    
T  13559582 aaattatagttagggaaccaaattgaaacaatcaattaagttaagggac-cggatgattgaataagc 13559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2916658 - 2916703
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagg 46  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||    
T  2916658 aaataatagttaggggaccaaattgagacaatcaattaagttaagg 2916703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11533726 - 11533791
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||| ||| | | |||||||||||||    
T  11533726 aaattatagttgggggaccaaattgagacaatcacttaagttaagagac-ctgatgattgaataagc 11533791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38982623 - 38982558
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||  ||||||| ||||||||||||||||||| ||| || ||||||||| |||||    
T  38982623 aaattatagttagggagccaaattgagacaatcaattaagttaaagga-tcgggtgattgattaagc 38982558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24126204 - 24126245
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagtt 42  Q
    |||||||||||||| ||||||||| ||| |||||||||||||    
T  24126204 aaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40987927 - 40987987
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaa 62  Q
    ||||||||||||| ||| |||||| ||||||| |||||||||||| ||| | ||||||||||    
T  40987927 aaattatagttagaggatcaaattgagacaattaattaagttaagagac-cgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19056216 - 19056151
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  19056216 aaattataattaggggaccaaattaatacaatcaattaagttaaggga-tcaggtgattgaataagc 19056151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37189629 - 37189693
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 66  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  37189629 aaattatagataggggaccaaattgagacaatcaattaagttaagggac-caggtgattgaataag 37189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10824650 - 10824715
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||    
T  10824650 aaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagc 10824715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 19056434 - 19056497
Alignment:
Q  3 attatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||    
T  19056434 attatagttaggggaccaaattaaaacaatcaattaagttaagggac-cggatgattgaataagc 19056497  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22683207 - 22683142
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||  | |||||||||||||||    
T  22683207 aaattatagttaggggaccaaattgagacaatcaattaagttaaagga-gcgggtgattgaataagc 22683142  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18844525 - 18844461
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 66  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| || ||| |||||||||    
T  18844525 aaattatagttaggggaccaaattgagataatcaattaagttaagggac-catgtggttgaataag 18844461  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18844729 - 18844795
Alignment:
Q  1 aaattatagttagggg-accaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  18844729 aaattatagttagggacaccaaattgagacaatcaattaagttaaggga-tcgggtgattgaataagc 18844795  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15825802 - 15825865
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||  |||||||| |||||||||||||||||||| ||| | |||||||||||||||    
T  15825802 aaattatagttagg--accaaattgagacaatcaattaagttaagagac-cgggtgattgaataagc 15825865  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37189433 - 37189369
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||| | ||||||||| ||||||||||||||||||| |||| | |||||||||||||||    
T  37189433 aaattatagttatgagaccaaattgagacaatcaattaagttaa-ggac-cgggtgattgaataagc 37189369  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 51663531 - 51663596
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||    
T  51663531 aaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagc 51663596  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 46003314 - 46003251
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 65  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||    
T  46003314 aaattatagttaggggaccaaattaaaacaatcaattaagttaaaggac-cgggtgattgaataa 46003251  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40244691 - 40244626
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  40244691 aaattatagttaagggaccaaattgagacaatcaattaagttaaggga-tcggatgattgaataagc 40244626  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 40244873 - 40244934
Alignment:
Q  5 tatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggac-ggggtgattgaataagc 40244934  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 46003529 - 46003593
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 66  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||    
T  46003529 aaattttagttaggggaccaaattgagacaatcaattaagttaagggac-cagatgattaaataag 46003593  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40364238 - 40364301
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 65  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||| || ||||||||||||    
T  40364238 aaattatagttaggagaccaaattgaaacaatcaattaagttaagggac-caagtgattgaataa 40364301  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20538215 - 20538280
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||||||| |||||| |||||||||||||| |||| |||| | |||||||||||||||    
T  20538215 aaattatagttaggggatcaaattgagacaatcaattaaattaaaggac-cgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40364107 - 40364060
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaaggga 48  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  40364107 aaattataattatgggaccaaattaagataatcaattaagttaaggga 40364060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 51663316 - 51663251
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||| ||| | ||||||| |||||||    
T  51663316 aaattatagttagtggaccatattaaaacaatcaattaagttaagagac-cgggtgattaaataagc 51663251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20537992 - 20537944
Alignment:
Q  1 aaattatagttaggggaccaaattaagacaatcaattaagttaagggac 49  Q
    ||||||||||||||||| |||||| | |  |||||||||||||||||||    
T  20537992 aaattatagttaggggatcaaattgataatatcaattaagttaagggac 20537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 21249425 - 21249363
Alignment:
Q  4 ttatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 67  Q
    ||||| ||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||    
T  21249425 ttataattaggggaccaaattgagacaatcaattacggtaagggac-caggtgattgaataagc 21249363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 21249629 - 21249678
Alignment:
Q  16 gaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 66  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggac-aagatgattgaataag 21249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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