View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_40 (Length: 292)
Name: NF13734_low_40
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 8866618 - 8866870
Alignment:
| Q |
16 |
atcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgattcgtagtctat |
115 |
Q |
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| T |
8866618 |
atcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgattcgtagtctat |
8866717 |
T |
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| Q |
116 |
gtaatctacaaagaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaacacat |
215 |
Q |
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| T |
8866718 |
gtaatctacaaagaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaacacat |
8866817 |
T |
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| Q |
216 |
tcatgttgtgatgattccttaacaagttggaaggggaatcgaataatcggttc |
268 |
Q |
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| T |
8866818 |
tcatgttgtgatgattccttaacaagttggaaggggaatcgaataatcggttc |
8866870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 8862752 - 8862996
Alignment:
| Q |
16 |
atcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgattcgtagtctat |
115 |
Q |
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| T |
8862752 |
atcggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtccatcactgaaattcggtttgattcgtagtctat |
8862851 |
T |
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| Q |
116 |
gtaatctacaaagaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaacacat |
215 |
Q |
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| T |
8862852 |
gtaatatacacggaatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactcaggatgagtacat |
8862951 |
T |
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| Q |
216 |
tcatgttgtgatgattccttaacaagttggaaggggaatcgaata |
260 |
Q |
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| T |
8862952 |
tgatcttgtgatgattcctcaactagttggaaggggaatcgaata |
8862996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 123 - 265
Target Start/End: Original strand, 9087303 - 9087445
Alignment:
| Q |
123 |
acaaagaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaacacattcatgtt |
222 |
Q |
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| T |
9087303 |
acaaagaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactcaggataaacacattgatctt |
9087402 |
T |
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| Q |
223 |
gtgatgattccttaacaagttggaaggggaatcgaataatcgg |
265 |
Q |
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| T |
9087403 |
gtgatgattccttaacgagttggaatgggaatcgaataatcgg |
9087445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 9071002 - 9071127
Alignment:
| Q |
128 |
gaatttgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactc---aggataaacacattcatgttgt |
224 |
Q |
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| T |
9071002 |
gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgatcttgt |
9071101 |
T |
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| Q |
225 |
gatgattccttaacaagttggaaggg |
250 |
Q |
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| T |
9071102 |
gatgattccttaacgatttggaaggg |
9071127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 9126497 - 9126575
Alignment:
| Q |
183 |
gtacaatataggcaaaactcaggataaacacattcatgttgtgatgattccttaacaagttggaaggggaatcgaataa |
261 |
Q |
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| T |
9126497 |
gtacaatacaggcaaaactcaggataaacacattgatcttgtgatgattccttaacgagttggaatgggcatcgaataa |
9126575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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