View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_low_41 (Length: 284)

Name: NF13734_low_41
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_low_41
NF13734_low_41
[»] chr8 (3 HSPs)
chr8 (125-266)||(11195949-11196090)
chr8 (10-75)||(11195832-11195897)
chr8 (167-266)||(9608582-9608681)
[»] chr4 (3 HSPs)
chr4 (126-266)||(48543933-48544073)
chr4 (141-266)||(45826085-45826209)
chr4 (136-266)||(52666024-52666154)
[»] chr3 (2 HSPs)
chr3 (126-266)||(43246384-43246524)
chr3 (138-266)||(30729546-30729674)
[»] chr5 (3 HSPs)
chr5 (143-266)||(1808298-1808421)
chr5 (140-246)||(7861802-7861908)
chr5 (136-172)||(27849431-27849467)
[»] chr6 (1 HSPs)
chr6 (126-266)||(8194503-8194643)
[»] chr1 (2 HSPs)
chr1 (137-267)||(31416075-31416205)
chr1 (144-228)||(38784108-38784192)
[»] chr2 (1 HSPs)
chr2 (126-263)||(3776689-3776823)
[»] chr7 (1 HSPs)
chr7 (136-263)||(35405817-35405944)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 125 - 266
Target Start/End: Original strand, 11195949 - 11196090
Alignment:
Q  125 cagactacagtccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgt 224  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||| ||    
T  11195949 cagactacagtccgcgatgataaacaaaacctatattgtctgccgtaagcaataaacgaaattcagcgagagggttaagcacgatctagagatcactcgt 11196048  T
Q  225 agactttgttccaagcttggctgaaaagtcagcacacatatt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11196049 agactttgttccaagcttggctgaaaagtcagcacacatatt 11196090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 11195832 - 11195897
Alignment:
Q  10 ataatacttacaaaaatatttattgcttctgtcttaaaatgtaataaaaaataacgtaggttgatg 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11195832 ataatacttacaaaaatatttattgcttctgtcttaaaatgtaataaaaaataacgtaagttgatg 11195897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 9608582 - 9608681
Alignment:
Q  167 ccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttccaagcttggctgaaaagtcagcacacatatt 266  Q
    ||||||| |||||| |||| ||| |  |||| |||||||| ||||| ||||||||||||||  ||||||||| |||| || ||||||||| |||||||||    
T  9608582 ccgtaagtaataaatgaagctcagctagaggtttaagcacaatcaatagatcacttgtagatcttgttccaaacttgactaaaaagtcagaacacatatt 9608681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 48544073 - 48543933
Alignment:
Q  126 agactacagtccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgta 225  Q
    ||||||| | |||||||||||||||||| | |||||||||||||||| |||||||||||| ||| | |  ||||||| ||| ||||| |||||||| |||    
T  48544073 agactaccggccgcgatgataagcaacacccatattgtctgccgtaaacaataaacgaagctcagctgacgggttaaacacaatcaatagatcactcgta 48543974  T
Q  226 gactttgttccaagcttggctgaaaagtcagcacacatatt 266  Q
    ||| ||||||||||||| ||| | |||||||||||||||||    
T  48543973 gaccttgttccaagctttgctaagaagtcagcacacatatt 48543933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 45826209 - 45826085
Alignment:
Q  141 atgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttccaagc 240  Q
    |||||||||||||   ||| |||| | |||||||||||||||||| ||||   ||||||||||||| ||||| | || |||||||||| |||| |||||     
T  45826209 atgataagcaacactcatactgtccgtcgtaagcaataaacgaagctcaattcgagggttaagcacaatcaataaattacttgtagac-ttgtaccaagt 45826111  T
Q  241 ttggctgaaaagtcagcacacatatt 266  Q
    |||||| | | ||||||| |||||||    
T  45826110 ttggctaagatgtcagcatacatatt 45826085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 266
Target Start/End: Original strand, 52666024 - 52666154
Alignment:
Q  136 ccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttc 235  Q
    |||||||||||| ||||||  ||||| |||  |||||| ||||||| ||  |||   ||||| |||||||| ||||| | |||||| |||||  |||||     
T  52666024 ccgcgatgataaacaacattcatattatctatcgtaagtaataaacaaaactcagttggaggattaagcacaatcaatatatcactcgtagatcttgttg 52666123  T
Q  236 caagcttggctgaaaagtcagcacacatatt 266  Q
    |||||||| || |||| |||| |||||||||    
T  52666124 caagcttgactaaaaaatcaggacacatatt 52666154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 43246524 - 43246384
Alignment:
Q  126 agactacagtccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgta 225  Q
    ||||||| | ||||||||||||||||||   ||||||||||||||||||||| ||||||| ||| | ||||| |||||||| | ||| |||||||| |||    
T  43246524 agactactgcccgcgatgataagcaacactcatattgtctgccgtaagcaatgaacgaagctcagctggaggattaagcacaaacaatagatcactcgta 43246425  T
Q  226 gactttgttccaagcttggctgaaaagtcagcacacatatt 266  Q
    ||| ||||||||||||||||| | || ||||||||||||||    
T  43246424 gaccttgttccaagcttggctaagaaatcagcacacatatt 43246384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 30729674 - 30729546
Alignment:
Q  138 gcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttcca 237  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||| | | | ||| | |||||||| | ||| ||||||  ||||| |||||||  |    
T  30729674 gcgatgataaacaacatccatattgtctaccgtaagcaataagcgaagcttagctggacgattaagcacaaccaatagatcatctgtagtctttgtttta 30729575  T
Q  238 agcttggctgaaaagtcagcacacatatt 266  Q
    ||||||||| |||| ||||||||||||||    
T  30729574 agcttggctaaaaaatcagcacacatatt 30729546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 1808421 - 1808298
Alignment:
Q  143 gataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttccaagctt 242  Q
    |||||||||||   ||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| | |||| |||||||||| ||    
T  1808421 gataagcaacactcatactgtctaccgtaagcaataaacgaagctcaactggagggttaagcacgatcaatacatcactcgcagaccttgttccaagttt 1808322  T
Q  243 ggctgaaaagtcagcacacatatt 266  Q
    |||| | |||||||||||||||||    
T  1808321 ggctaagaagtcagcacacatatt 1808298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 7861802 - 7861908
Alignment:
Q  140 gatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttccaag 239  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||| |||   || ||||||||||||||||| |  |||||  ||||| ||||| ||||    
T  7861802 gatgataaacaacatccatactgtctgccgtaagcaataaacgaagctcagttggcgggttaagcacgatcaataagtcactattagaccttgtttcaag 7861901  T
Q  240 cttggct 246  Q
    |||||||    
T  7861902 cttggct 7861908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 27849467 - 27849431
Alignment:
Q  136 ccgcgatgataagcaacatctatattgtctgccgtaa 172  Q
    |||||||||||||||||||| |||||||||| |||||    
T  27849467 ccgcgatgataagcaacatccatattgtctgtcgtaa 27849431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 8194503 - 8194643
Alignment:
Q  126 agactacagtccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgta 225  Q
    |||||| || || ||||||||||||||||  ||||||||||| |||||||| |||||||| ||| |  |||| | || ||| ||||| |||||||| |||    
T  8194503 agactataggccacgatgataagcaacatagatattgtctgctgtaagcaacaaacgaagctcagccagaggatcaaacacaatcaaaagatcactagta 8194602  T
Q  226 gactttgttccaagcttggctgaaaagtcagcacacatatt 266  Q
    ||| ||||||||||||| ||| |||||||||||||||||||    
T  8194603 gaccttgttccaagctttgctaaaaagtcagcacacatatt 8194643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 31416075 - 31416205
Alignment:
Q  137 cgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttcc 236  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||| || || | ||| |||||||| ||||| |||||| | |||||| || |||     
T  31416075 cgcgatgataagcaacacccatactgtctgccgtaagcaataaacgaagctcgactgaaggattaagcacaatcaatagatcaatcgtagaccttattct 31416174  T
Q  237 aagcttggctgaaaagtcagcacacatattt 267  Q
    || ||||||| |||| |||||||||||||||    
T  31416175 aaacttggcttaaaaatcagcacacatattt 31416205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 38784108 - 38784192
Alignment:
Q  144 ataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagac 228  Q
    ||||||||||  |||||||||| |||||||||||||| |||| ||| | ||||| |||||||||||||| |||||||| ||||||    
T  38784108 ataagcaacacatatattgtctaccgtaagcaataaatgaagctcagctggaggattaagcacgatcaatagatcactcgtagac 38784192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 3776689 - 3776823
Alignment:
Q  126 agactacagtccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgta 225  Q
    ||||||| | |||||||||||||||||| | ||| ||||||| ||||||||||| |||||  || | | ||||| |||||||||||| | ||||||  ||    
T  3776689 agactactgaccgcgatgataagcaacacccatactgtctgctgtaagcaataagcgaagcccagccgaagggtcaagcacgatcaatatatcactcata 3776788  T
Q  226 gactttgttccaagcttggctgaaaagtcagcacacat 263  Q
     || |||||| ||||||| ||   ||||||||||||||    
T  3776789 aaccttgttctaagcttgact---aagtcagcacacat 3776823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 35405817 - 35405944
Alignment:
Q  136 ccgcgatgataagcaacatctatattgtctgccgtaagcaataaacgaagttcaacgggagggttaagcacgatcaagagatcacttgtagactttgttc 235  Q
    |||||||||||| ||||| | ||| | ||||||||||||||||||| ||| ||  | || || |||| ||| ||||| |||| | | |||||| ||||||    
T  35405817 ccgcgatgataaacaacacccatactatctgccgtaagcaataaacaaagctcggctggtggattaaacacaatcaatagattattcgtagaccttgttc 35405916  T
Q  236 caagcttggctgaaaagtcagcacacat 263  Q
    ||||||| ||| | |||||| |||||||    
T  35405917 caagcttagctaagaagtcaacacacat 35405944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University