View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_48 (Length: 251)
Name: NF13734_low_48
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5448560 - 5448795
Alignment:
| Q |
1 |
tgtcagtagataagctcaaataagccacttcttgtccatatgaaaatgatgtaaggtnnnnnnnnnnnnnnnnnnnngaaga---agcatgtgatatagt |
97 |
Q |
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| T |
5448560 |
tgtcagtagataagctcaaataagccacttcttgtccatatgaaaatgatgtaaggtacaaacaacaacaacaacaacaagaagaagcatgtgatatagt |
5448659 |
T |
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| Q |
98 |
acaaattaaagtcttattcaactttaagttatatagagttgcctgtgaaatggggtatttggattgaaacatcaacaataacaacaatgactattattac |
197 |
Q |
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| T |
5448660 |
acaaattaaagtcttattcaattttaagttatatagagttgcctgtgaaatggggtatttggattgaaacatcaacaataactacaatgactattattac |
5448759 |
T |
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| Q |
198 |
tagaaacaacaacttatcataaacgtatgcatgtag |
233 |
Q |
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| T |
5448760 |
tagaaacaacaacttatcataaacgtatgcatgtag |
5448795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 5457355 - 5457498
Alignment:
| Q |
79 |
aagaagcatgtgatatagtacaaattaaagtcttattcaactttaagttatatagagttgcctgtgaaatggggtatttggattgaaacatcaacaataa |
178 |
Q |
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||||||| |||||| || ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
5457355 |
aagaagcctgtgatgtaaaacaaattaaagtcttattcaactttaagtcata--gagttacctgtgaaatgggttatttggattgaaacatcaacaataa |
5457452 |
T |
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| Q |
179 |
caac-aatgactattattactagaaacaacaacttatcataaacgt |
223 |
Q |
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|||| |||||||||| ||||||||||||||||||| |||||||||| |
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| T |
5457453 |
caacaaatgactattcttactagaaacaacaacttctcataaacgt |
5457498 |
T |
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