View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_low_5 (Length: 600)

Name: NF13734_low_5
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_low_5
NF13734_low_5
[»] chr7 (7 HSPs)
chr7 (11-547)||(32016356-32016906)
chr7 (15-51)||(27720467-27720503)
chr7 (22-51)||(6518104-6518133)
chr7 (20-53)||(23747400-23747433)
chr7 (15-51)||(3250027-3250063)
chr7 (11-51)||(7982293-7982333)
chr7 (15-51)||(24672798-24672834)
[»] chr1 (1 HSPs)
chr1 (14-50)||(24808440-24808476)
[»] chr3 (1 HSPs)
chr3 (321-364)||(7425062-7425105)
[»] chr8 (1 HSPs)
chr8 (13-51)||(16900876-16900914)
[»] chr4 (2 HSPs)
chr4 (11-45)||(18986938-18986972)
chr4 (18-50)||(680126-680158)
[»] chr2 (2 HSPs)
chr2 (13-51)||(1813559-1813597)
chr2 (22-50)||(41947075-41947103)
[»] chr6 (4 HSPs)
chr6 (11-40)||(20808912-20808941)
chr6 (13-50)||(29165917-29165954)
chr6 (22-50)||(27708106-27708134)
chr6 (22-50)||(27727932-27727960)
[»] scaffold0349 (1 HSPs)
scaffold0349 (22-50)||(6511-6539)


Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Original strand, 32016356 - 32016906
Alignment:
Q  11 cacagatcacggaaaatagtggtttgttcaaattctgctacccgttgacaacactgacttcaagtcaagaggactcttgtatcggaattgggtccttact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  32016356 cacagatcacggaaaatagtggtttgttcaaattctgctacccgttgacaacacttacttcaagtcaagaggactcttgtattggaattgggtccttact 32016455  T
Q  111 tggcgcagaaaccttttctcttgggaggaggagtt----actaaccttatggttaggattggggattggagggtgtctcatgaggaggacaggtggaagt 206  Q
    ||||| |||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016456 tggcgtagaaaccttttcgcttgggaggaggagttagttactaaccttatggttaggattggggattggagggtgtctcatgaggaggacaggtggaagt 32016555  T
Q  207 tgagatttgaggatgatggagtcatttcggtaagctcagtgtacaaggtgttggaggggttgttaattttagaggatggtttgaatcctgtggaggaaaa 306  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  32016556 tgagatttgaggatgatggagtcatttcggtaagctcaatgtacaaggtgttggaggggttgttaattttagaggatggtttgaatccggtggaggaaga 32016655  T
Q  307 ggtgtttgattacttttggaaaagcccggccccgtcaaaagttgtggctttttcttg----------cgtgatcggattcctacgggaggaatcttgcca 396  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||          ||| ||||||||||||| |||| ||||||||||    
T  32016656 ggtgtttggttacctttggaaaagcccagccccgtcaaaagttgtggctttttcttggaaacttcttcgtaatcggattcctacaggagaaatcttgcca 32016755  T
Q  397 ttcagaatttattggacccgaaaagttcgaccaattgtgttttttgcgatgcttaggtagaatcttcaacgcatcttttcttgcattgtagtgttatttc 496  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  32016756 ttcagaatttattggatccgaaaagttcgaccaattgtgttttttgcgatgcttcggtagaatcttcaacacatattttcttgcattgtagtgttatttc 32016855  T
Q  497 taagaattggaggaaaatcatgggattgactttggagaaaaatcatggatt 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016856 taagaattggaggaaaatcatgggattgactttggagaaaaatcatggatt 32016906  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 27720503 - 27720467
Alignment:
Q  15 gatcacggaaaatagtggtttgttcaaattctgctac 51  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27720503 gatcatggaaaatagtggtttgttcaaattctgctac 27720467  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 6518104 - 6518133
Alignment:
Q  22 gaaaatagtggtttgttcaaattctgctac 51  Q
    ||||||||||||||||||||||||||||||    
T  6518104 gaaaatagtggtttgttcaaattctgctac 6518133  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 23747433 - 23747400
Alignment:
Q  20 cggaaaatagtggtttgttcaaattctgctaccc 53  Q
    ||||||||||||||||||| ||||||||||||||    
T  23747433 cggaaaatagtggtttgtttaaattctgctaccc 23747400  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 3250027 - 3250063
Alignment:
Q  15 gatcacggaaaatagtggtttgttcaaattctgctac 51  Q
    |||||| |||||||||||||| |||||||||||||||    
T  3250027 gatcacagaaaatagtggtttcttcaaattctgctac 3250063  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 7982293 - 7982333
Alignment:
Q  11 cacagatcacggaaaatagtggtttgttcaaattctgctac 51  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  7982293 cacagatcacgtaaaatagtggtttgttcaaactccgctac 7982333  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 24672798 - 24672834
Alignment:
Q  15 gatcacggaaaatagtggtttgttcaaattctgctac 51  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  24672798 gatcatggaaaatagcggtttgttcaaattctgctac 24672834  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 24808476 - 24808440
Alignment:
Q  14 agatcacggaaaatagtggtttgttcaaattctgcta 50  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24808476 agatcacggaaaacagtggtttgttcaaattctgcta 24808440  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 7425062 - 7425105
Alignment:
Q  321 tttggaaaagcccggccccgtcaaaagttgtggctttttcttgc 364  Q
    ||||||| |||||||| | |||||||||||||||||||||||||    
T  7425062 tttggaagagcccggctcggtcaaaagttgtggctttttcttgc 7425105  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 16900876 - 16900914
Alignment:
Q  13 cagatcacggaaaatagtggtttgttcaaattctgctac 51  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  16900876 cagatcacggaaaatagcggtttgctcaaattctgctac 16900914  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 18986938 - 18986972
Alignment:
Q  11 cacagatcacggaaaatagtggtttgttcaaattc 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  18986938 cacagatcacggaaagtagtggtttgttcaaattc 18986972  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 680126 - 680158
Alignment:
Q  18 cacggaaaatagtggtttgttcaaattctgcta 50  Q
    ||||||||||||| |||||||||||||||||||    
T  680126 cacggaaaatagttgtttgttcaaattctgcta 680158  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 1813597 - 1813559
Alignment:
Q  13 cagatcacggaaaatagtggtttgttcaaattctgctac 51  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  1813597 cagatcacggaaaataatggtttgttcaaattccgctac 1813559  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 41947075 - 41947103
Alignment:
Q  22 gaaaatagtggtttgttcaaattctgcta 50  Q
    |||||||||||||||||||||||||||||    
T  41947075 gaaaatagtggtttgttcaaattctgcta 41947103  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 20808941 - 20808912
Alignment:
Q  11 cacagatcacggaaaatagtggtttgttca 40  Q
    ||||||||||||||||||||||||||||||    
T  20808941 cacagatcacggaaaatagtggtttgttca 20808912  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 29165954 - 29165917
Alignment:
Q  13 cagatcacggaaaatagtggtttgttcaaattctgcta 50  Q
    |||||||||||||| || ||||||||||||||||||||    
T  29165954 cagatcacggaaaacagcggtttgttcaaattctgcta 29165917  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 27708106 - 27708134
Alignment:
Q  22 gaaaatagtggtttgttcaaattctgcta 50  Q
    |||||||||||||||||||||||||||||    
T  27708106 gaaaatagtggtttgttcaaattctgcta 27708134  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 27727932 - 27727960
Alignment:
Q  22 gaaaatagtggtttgttcaaattctgcta 50  Q
    |||||||||||||||||||||||||||||    
T  27727932 gaaaatagtggtttgttcaaattctgcta 27727960  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 6511 - 6539
Alignment:
Q  22 gaaaatagtggtttgttcaaattctgcta 50  Q
    |||||||||||||||||||||||||||||    
T  6511 gaaaatagtggtttgttcaaattctgcta 6539  T

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