View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_50 (Length: 239)
Name: NF13734_low_50
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6095024 - 6094794
Alignment:
| Q |
1 |
tctcaagttagtgcgaggaagataagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
6095024 |
tctcaagttagtgcgaggaagataagaatgtctgaagagaatcaatcttttcaacgccaattgcagcagaaacgtgaaaatgaacttgacaagttacaag |
6094925 |
T |
|
| Q |
101 |
ctgctgtaagtatttgttcaatgttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatccaaccaata |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |
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| T |
6094924 |
ctgctgtaagtatttgttcaatattaatttatttttatgattatggttaatgtgttgtttttatagaaaatgtgttcaattttgttcaacccaaccagta |
6094825 |
T |
|
| Q |
201 |
catttatatattttgattttgtttaagaata |
231 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
6094824 |
catttatatgctttgattttgtttaagaata |
6094794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 44162744 - 44162528
Alignment:
| Q |
15 |
gaggaagataagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
114 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44162744 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
44162645 |
T |
|
| Q |
115 |
tgttcaatgttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatccaaccaatacatttatatatttt |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
44162644 |
tgttcaatattaatttatttttatgattatggttaatgtgttgtttttatagaaaatgtgttcaattttgttcaatccaaccagtacatttgtatgcttt |
44162545 |
T |
|
| Q |
215 |
gattttgtttaagaata |
231 |
Q |
| |
|
||||||||||||||||| |
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| T |
44162544 |
gattttgtttaagaata |
44162528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 44188864 - 44188648
Alignment:
| Q |
15 |
gaggaagataagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44188864 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
44188765 |
T |
|
| Q |
115 |
tgttcaatgttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatccaaccaatacatttatatatttt |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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|
| T |
44188764 |
tgttcaatattaatttatttttatgattatggttaatgtgttgtttttatagaaaatgtgttcaattttgttcaatccaaccagtacatttgtatgcttt |
44188665 |
T |
|
| Q |
215 |
gattttgtttaagaata |
231 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
44188664 |
gattttgtttaagaata |
44188648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 32727992 - 32727776
Alignment:
| Q |
15 |
gaggaagataagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32727992 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
32727893 |
T |
|
| Q |
115 |
tgttcaatgttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatccaaccaatacatttatatatttt |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
32727892 |
tgttcaatattaatttatttttatgattgtggttaatgtgttgtttttatagaaaatgtattcaattttgttcaatccaaccagtacatttgtatgcttt |
32727793 |
T |
|
| Q |
215 |
gattttgtttaagaata |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32727792 |
gattttgtttaagaata |
32727776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 32719008 - 32718839
Alignment:
| Q |
15 |
gaggaagataagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32719008 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
32718909 |
T |
|
| Q |
115 |
tgttcaatgttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttg |
184 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
32718908 |
tattcaatattaatttatttttatgattgtggttaatgtgttgtttttatagaaaatgtgttcaattttg |
32718839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43095277 - 43095497
Alignment:
| Q |
1 |
tctcaagttagtgcgaggaagataagaatgtctgaagagaatcaatcatttcaacgccaattgcagcaaaaacgtgaaaaggaacttgacaagttacaag |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
43095277 |
tctcaagttagtgcgaggaaaatcagaatgtctgaggagaatcaatcttttcaacgccaattgcagcagaaacgtgaaaaggaacttgacaagttacaag |
43095376 |
T |
|
| Q |
101 |
ctgctgtaagtatttgttcaatgttaatttatttttatgattatggttaatgtgttgattttatagaaaatgtgttcaattttgttcaatccaaccaata |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| |||||| ||||| ||| ||||||||||| ||||| ||||| |
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|
| T |
43095377 |
ctgctgtaagtatttgttcaatattaatttatttttatgattatgcttagtgttttgtttttat---aaatgcgtttaattttgttcagtccaatcaata |
43095473 |
T |
|
| Q |
201 |
catttatatattttgattttgttt |
224 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
43095474 |
catttatatgctttgattttgttt |
43095497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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