View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13734_low_53 (Length: 226)
Name: NF13734_low_53
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_53 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40673237 - 40673012
Alignment:
| Q |
1 |
tcatcagtcttgatagagaattcccaagtttccgagtcgagtcggcatcactcaaccaactaaccataaatggcaccgagaaaatgagtgcctcattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40673237 |
tcatcagtcttgatagagaattcccaagtttccgagtcgagtcggcatcactcaaccaactaaccataaatggcaccgagaaaatgagtgcctcattgaa |
40673138 |
T |
|
| Q |
101 |
cataacactctcagtctccgacccaaaccagtatctaagtgtctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcgatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40673137 |
cataacactctcagtctccgacccaaaccagtatctaagtgtctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcgatgtg |
40673038 |
T |
|
| Q |
201 |
attctcaagacatcaactcttcaacc |
226 |
Q |
| |
|
| |||||||||||||||| ||||||| |
|
|
| T |
40673037 |
actctcaagacatcaactattcaacc |
40673012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 40683480 - 40683363
Alignment:
| Q |
78 |
gagaaaatgagtgcctcattgaacataacactctcagtctccgacccaaaccagtatctaagtgtctcataccaagaaacactcaatgctgatgtatttt |
177 |
Q |
| |
|
||||||||||| || ||| |||||| ||| ||||| | ||| ||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
40683480 |
gagaaaatgagcgctgcatggaacatcacagtctcattgtccaacccaaagcagtatctaagtgtctcataccaagatacactcgatgctgagatatttt |
40683381 |
T |
|
| Q |
178 |
acagagatgaatatggcg |
195 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
40683380 |
acatggatgaatatggcg |
40683363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University