View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13734_low_55 (Length: 221)

Name: NF13734_low_55
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13734_low_55
NF13734_low_55
[»] scaffold0018 (1 HSPs)
scaffold0018 (18-208)||(171094-171284)
[»] chr2 (23 HSPs)
chr2 (18-208)||(14105109-14105299)
chr2 (90-208)||(44956999-44957117)
chr2 (28-174)||(13059872-13060017)
chr2 (133-208)||(5870570-5870644)
chr2 (133-208)||(5873712-5873786)
chr2 (133-208)||(15944007-15944081)
chr2 (133-208)||(15952522-15952596)
chr2 (133-208)||(18500754-18500828)
chr2 (133-208)||(42565398-42565472)
chr2 (133-208)||(42574022-42574096)
chr2 (141-202)||(40386571-40386632)
chr2 (133-208)||(11874224-11874298)
chr2 (133-208)||(35139135-35139209)
chr2 (133-208)||(35147471-35147545)
chr2 (133-208)||(38083983-38084057)
chr2 (133-208)||(45031681-45031756)
chr2 (133-208)||(17748-17821)
chr2 (133-203)||(17254872-17254942)
chr2 (133-176)||(18972593-18972636)
chr2 (133-176)||(24690622-24690665)
chr2 (133-176)||(41233323-41233366)
chr2 (133-176)||(19883930-19883973)
chr2 (133-166)||(36735852-36735885)
[»] chr8 (16 HSPs)
chr8 (20-208)||(19954798-19954986)
chr8 (26-208)||(2470502-2470684)
chr8 (18-208)||(19950344-19950534)
chr8 (34-203)||(21640558-21640725)
chr8 (83-208)||(4543740-4543864)
chr8 (29-203)||(7146346-7146522)
chr8 (133-208)||(22156448-22156522)
chr8 (133-208)||(32025113-32025187)
chr8 (133-208)||(39837032-39837106)
chr8 (133-208)||(39845074-39845148)
chr8 (133-208)||(25858730-25858804)
chr8 (133-208)||(32000294-32000368)
chr8 (133-208)||(32007263-32007337)
chr8 (52-202)||(30779382-30779527)
chr8 (133-208)||(30938825-30938899)
chr8 (133-208)||(22162454-22162525)
[»] chr4 (24 HSPs)
chr4 (18-208)||(16595348-16595538)
chr4 (29-208)||(55081092-55081271)
chr4 (22-208)||(33722291-33722478)
chr4 (27-208)||(20513632-20513813)
chr4 (18-130)||(7216607-7216719)
chr4 (83-208)||(8816975-8817100)
chr4 (46-208)||(2574745-2574907)
chr4 (31-179)||(39991319-39991471)
chr4 (133-208)||(3381903-3381977)
chr4 (133-208)||(19737472-19737546)
chr4 (133-208)||(20548904-20548978)
chr4 (133-208)||(39744889-39744963)
chr4 (92-202)||(12613682-12613792)
chr4 (141-208)||(3388649-3388715)
chr4 (93-208)||(40684317-40684432)
chr4 (133-208)||(50188318-50188392)
chr4 (114-170)||(15017490-15017546)
chr4 (133-208)||(8093742-8093816)
chr4 (133-208)||(8102547-8102621)
chr4 (133-208)||(55792697-55792770)
chr4 (133-176)||(8658023-8658066)
chr4 (133-208)||(38853887-38853961)
chr4 (133-208)||(18482845-18482918)
chr4 (27-180)||(10566699-10566851)
[»] chr3 (33 HSPs)
chr3 (18-208)||(48431684-48431872)
chr3 (18-208)||(48435267-48435456)
chr3 (29-203)||(16983492-16983666)
chr3 (18-203)||(4662695-4662880)
chr3 (133-208)||(13105104-13105178)
chr3 (133-208)||(13111261-13111335)
chr3 (133-208)||(14880776-14880850)
chr3 (133-208)||(14892591-14892665)
chr3 (133-208)||(21638023-21638097)
chr3 (133-208)||(261883-261957)
chr3 (133-208)||(8606686-8606760)
chr3 (133-208)||(8613147-8613221)
chr3 (133-208)||(9524880-9524954)
chr3 (133-208)||(23287592-23287666)
chr3 (133-208)||(48060194-48060268)
chr3 (133-201)||(14887501-14887567)
chr3 (127-208)||(41007095-41007175)
chr3 (133-208)||(4313057-4313130)
chr3 (133-208)||(68679-68753)
chr3 (133-208)||(74772-74846)
chr3 (133-208)||(8154106-8154180)
chr3 (145-208)||(11181305-11181367)
chr3 (133-208)||(16030780-16030854)
chr3 (133-200)||(35491563-35491630)
chr3 (133-208)||(37468552-37468626)
chr3 (133-208)||(41015880-41015954)
chr3 (133-208)||(9554555-9554630)
chr3 (133-177)||(12558376-12558420)
chr3 (133-208)||(16815317-16815390)
chr3 (133-208)||(14398050-14398125)
chr3 (133-174)||(17934598-17934639)
chr3 (133-202)||(44362997-44363065)
chr3 (141-176)||(26386203-26386238)
[»] chr6 (26 HSPs)
chr6 (22-208)||(32814454-32814640)
chr6 (18-184)||(35130175-35130340)
chr6 (44-208)||(14042169-14042338)
chr6 (133-208)||(19899482-19899556)
chr6 (133-208)||(25505992-25506066)
chr6 (86-177)||(29610426-29610519)
chr6 (44-184)||(14776093-14776232)
chr6 (44-208)||(28969449-28969613)
chr6 (133-208)||(19720370-19720444)
chr6 (133-208)||(22232071-22232145)
chr6 (133-208)||(22764335-22764408)
chr6 (141-208)||(18909620-18909686)
chr6 (133-208)||(20458928-20459002)
chr6 (133-203)||(22778589-22778657)
chr6 (131-202)||(29600901-29600971)
chr6 (133-208)||(30823988-30824062)
chr6 (133-208)||(35091128-35091202)
chr6 (133-202)||(28702356-28702424)
chr6 (133-177)||(19714214-19714258)
chr6 (133-208)||(3917054-3917128)
chr6 (133-208)||(10984537-10984611)
chr6 (133-208)||(20452111-20452185)
chr6 (133-208)||(26896977-26897051)
chr6 (141-208)||(28002378-28002447)
chr6 (141-197)||(7245042-7245097)
chr6 (145-208)||(12667000-12667062)
[»] chr1 (26 HSPs)
chr1 (29-208)||(36725233-36725412)
chr1 (29-208)||(12906667-12906846)
chr1 (18-195)||(24159194-24159371)
chr1 (29-208)||(33380319-33380498)
chr1 (22-208)||(23191405-23191591)
chr1 (22-209)||(2493205-2493392)
chr1 (62-208)||(19309033-19309179)
chr1 (29-203)||(31064486-31064660)
chr1 (28-184)||(28857450-28857606)
chr1 (28-208)||(27761234-27761410)
chr1 (61-208)||(25661278-25661425)
chr1 (93-208)||(9352765-9352880)
chr1 (93-208)||(9327919-9328034)
chr1 (134-208)||(8770130-8770204)
chr1 (133-203)||(15473333-15473402)
chr1 (133-202)||(51968458-51968527)
chr1 (133-208)||(20429887-20429961)
chr1 (133-208)||(44832014-44832088)
chr1 (133-208)||(47108902-47108976)
chr1 (133-202)||(2416171-2416239)
chr1 (133-208)||(3432362-3432436)
chr1 (133-208)||(19367992-19368066)
chr1 (133-176)||(31540497-31540540)
chr1 (133-176)||(31549066-31549109)
chr1 (94-182)||(32987765-32987853)
chr1 (90-139)||(9252903-9252952)
[»] chr7 (22 HSPs)
chr7 (27-203)||(6897790-6897966)
chr7 (94-208)||(29477713-29477827)
chr7 (76-200)||(25831790-25831914)
chr7 (133-208)||(28415659-28415733)
chr7 (90-208)||(46299384-46299502)
chr7 (136-208)||(1858033-1858104)
chr7 (133-208)||(34132294-34132368)
chr7 (133-208)||(34138606-34138680)
chr7 (133-202)||(6851480-6851548)
chr7 (53-186)||(4333196-4333333)
chr7 (53-186)||(4337443-4337580)
chr7 (133-208)||(12978998-12979072)
chr7 (133-208)||(13832021-13832095)
chr7 (133-208)||(13840051-13840125)
chr7 (133-208)||(18303851-18303925)
chr7 (142-199)||(32158556-32158613)
chr7 (133-176)||(4831839-4831882)
chr7 (133-208)||(43005128-43005203)
chr7 (133-176)||(44412806-44412849)
chr7 (144-208)||(20542364-20542427)
chr7 (133-208)||(46461578-46461653)
chr7 (161-209)||(23615846-23615894)
[»] chr5 (30 HSPs)
chr5 (28-208)||(18264896-18265075)
chr5 (22-182)||(15591144-15591304)
chr5 (133-208)||(10058307-10058382)
chr5 (133-208)||(24956299-24956373)
chr5 (133-208)||(24964759-24964833)
chr5 (133-208)||(25526713-25526787)
chr5 (133-208)||(25533395-25533469)
chr5 (133-208)||(28844462-28844536)
chr5 (133-208)||(28853072-28853146)
chr5 (133-208)||(36448777-36448851)
chr5 (133-208)||(36455161-36455235)
chr5 (133-208)||(30249847-30249921)
chr5 (133-208)||(37048890-37048964)
chr5 (133-202)||(40015424-40015492)
chr5 (133-208)||(20092232-20092305)
chr5 (133-208)||(20099109-20099182)
chr5 (133-208)||(1727626-1727700)
chr5 (133-208)||(20639324-20639398)
chr5 (133-208)||(23349540-23349615)
chr5 (133-208)||(25041728-25041802)
chr5 (133-208)||(26186109-26186183)
chr5 (133-208)||(43597513-43597587)
chr5 (133-208)||(43630307-43630381)
chr5 (133-208)||(23377761-23377834)
chr5 (133-208)||(1285751-1285826)
chr5 (133-208)||(15956457-15956531)
chr5 (145-208)||(16563759-16563822)
chr5 (141-208)||(13358936-13359003)
chr5 (133-208)||(16747724-16747799)
chr5 (93-175)||(38227436-38227516)
[»] scaffold0226 (1 HSPs)
scaffold0226 (114-203)||(5738-5827)
[»] scaffold0065 (1 HSPs)
scaffold0065 (133-203)||(43707-43777)
[»] scaffold0009 (2 HSPs)
scaffold0009 (94-208)||(163843-163957)
scaffold0009 (152-208)||(148721-148777)
[»] scaffold0096 (1 HSPs)
scaffold0096 (133-208)||(845-919)
[»] scaffold0085 (1 HSPs)
scaffold0085 (133-208)||(18209-18283)
[»] scaffold0031 (1 HSPs)
scaffold0031 (133-208)||(33184-33259)
[»] scaffold0301 (1 HSPs)
scaffold0301 (131-208)||(9431-9507)
[»] scaffold0027 (1 HSPs)
scaffold0027 (133-202)||(24116-24184)
[»] scaffold0586 (1 HSPs)
scaffold0586 (83-175)||(5227-5319)
[»] scaffold0039 (1 HSPs)
scaffold0039 (133-208)||(89332-89406)
[»] scaffold0028 (1 HSPs)
scaffold0028 (133-208)||(66338-66412)
[»] scaffold0351 (1 HSPs)
scaffold0351 (133-199)||(7082-7148)
[»] scaffold0119 (1 HSPs)
scaffold0119 (133-202)||(39683-39751)
[»] scaffold0346 (1 HSPs)
scaffold0346 (53-186)||(12730-12867)
[»] scaffold0016 (1 HSPs)
scaffold0016 (133-208)||(14631-14704)
[»] scaffold0306 (1 HSPs)
scaffold0306 (133-176)||(16178-16221)
[»] scaffold1699 (1 HSPs)
scaffold1699 (133-199)||(862-927)
[»] scaffold0555 (1 HSPs)
scaffold0555 (153-208)||(4802-4857)
[»] scaffold0043 (1 HSPs)
scaffold0043 (133-176)||(32720-32763)


Alignment Details
Target: scaffold0018 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 171094 - 171284
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||    
T  171094 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatttttggctcttcacctataaatagagctcctctccttc 171193  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  171194 acttctactcatcccaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcttttc 171284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 14105299 - 14105109
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  14105299 agaaatcatgtcattgattttgtagaggtcaactaatcctagccattggatttgtaactcatctttggctcctcacctataaatagagctcctctccctc 14105200  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||| ||||    
T  14105199 acttttactcaccccaaaagttctcttgagttgtcaaataacttttctctcttctctctcctttagcttgtgttgacgagctattcttttc 14105109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 44956999 - 44957117
Alignment:
Q  90 tcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatg 189  Q
    ||||||||||||||| |||   | |||||||| ||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||| | |     
T  44956999 tcacctataaatagaactctcattcctcacttgtactcaccccaaaagttctcttgagttgttaaagaaattttctctcttctccctcctttagcttgtc 44957098  T
Q  190 ttgacgagctattcatttc 208  Q
    |||||||||||||| ||||    
T  44957099 ttgacgagctattcttttc 44957117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 13059872 - 13060017
Alignment:
Q  28 tcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactc 127  Q
    |||||||||||  |  |||||| ||||||||||||||| |||| ||||| |||| || ||| |||||||||||||| |||||| || ||||||| || |     
T  13059872 tcattgatttttaaatggtcaactaatcctagccattgaatttataacttatctttgactcctcacctataaatagtgctcatatctctcacttttatta 13059971  T
Q  128 accctaaaagttatcttgagttgtcaaagaacttttctctcttctcc 174  Q
    || | ||||||| ||||||||| ||||||||||||||||||||||||    
T  13059972 acac-aaaagttctcttgagttttcaaagaacttttctctcttctcc 13060017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 5870644 - 5870570
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  5870644 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 5870570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 5873786 - 5873712
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  5873786 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 5873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 15944081 - 15944007
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  15944081 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 15944007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 15952596 - 15952522
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  15952596 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 15952522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 18500754 - 18500828
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  18500754 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 18500828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 42565472 - 42565398
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  42565472 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 42565398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 42574096 - 42574022
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  42574096 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 42574022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 40386632 - 40386571
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  40386632 tcttgagttgtcaaagaacttttctctcttctccctcatttagcttgtgttgacgagctatt 40386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 11874224 - 11874298
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  11874224 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 11874298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 35139135 - 35139209
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| ||||    
T  35139135 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttaacttgtgttgacgagctattcttttc 35139209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 35147471 - 35147545
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| ||||    
T  35147471 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttaacttgtgttgacgagctattcttttc 35147545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 38084057 - 38083983
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  38084057 aaaagttctcttgagttgtaaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 38083983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 45031756 - 45031681
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||||||| | | |||||||||||||||| ||||    
T  45031756 aaaagttctcttgagttgtcaaagaacctttatctcttctccctcctttaacttgtgttgacgagctattcttttc 45031681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 17821 - 17748
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||| ||||    
T  17821 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattcttttc 17748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 17254872 - 17254942
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||| |||| | | ||||||||||||||||    
T  17254872 aaaagttctcttgagttgacaaagatcttttctctcttctccctcatttatcttgtgttgacgagctattc 17254942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 18972636 - 18972593
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  18972636 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 18972593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 24690622 - 24690665
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  24690622 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 24690665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 41233366 - 41233323
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  41233366 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 41233323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 19883973 - 19883930
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||    
T  19883973 aaaagttcttttgagttgtcaaagaacttctctctcttctccct 19883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 36735852 - 36735885
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctc 166  Q
    ||||||| ||||||||||||||||||||||||||    
T  36735852 aaaagttctcttgagttgtcaaagaacttttctc 36735885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 19954986 - 19954798
Alignment:
Q  20 aaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcac 119  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || |||||| |||    
T  19954986 aaatcatgtcattgattttgtagaggtcaactaatcctagccaatggatttgtaactcatctttggctcttcacttataaatagagttcctctcccacac 19954887  T
Q  120 ttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  19954886 ttctactcaccccaaaagttctcttgagttgtcaaagaatttttctctcttctccctcctttagcatgtgttgacgagctattcttttc 19954798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 2470684 - 2470502
Alignment:
Q  26 tgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctac 125  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  2470684 tgtcattgattttgtagaggtcagctaatcctagccattggatttgtaactcatctttggctcttcacctataaatagagctcctctccctcacttctac 2470585  T
Q  126 tcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    | | || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||    
T  2470584 tgatcccaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcttgtgttgacgggctattcttttc 2470502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 19950534 - 19950344
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  19950534 agaaatcatgtcattgattttgtagaggtcaactaatcatagccattggatttgtaactcatctttggctcttcacctataaatagagttcctctccctc 19950435  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||| ||||    
T  19950434 acttctactcacctcaaaagttctcttgagttgtcaaagaacttttctctcttctccctcctttaatttgtgttgacgagctattcttttc 19950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 21640558 - 21640725
Alignment:
Q  34 attttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcacccta 133  Q
    ||||||||  |||||| | ||| | ||| ||||||||| ||||||||| || ||| ||||||||||||||||| | ||| |||||||| ||||||||| |    
T  21640558 attttgtaacggtcaaatgatcttggccgttggatttg-aactcatctttgactcctcacctataaatagagcac-tcttcctcacttttactcacccca 21640655  T
Q  134 aaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  21640656 aaagttctcttgagttgtcaaagaacttttctctcttctccctcatttagcttgtgttgacgagctattc 21640725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 4543740 - 4543864
Alignment:
Q  83 tggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctccttta 182  Q
    |||||| ||| |||||| |||||| | ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4543740 tggctcctcatctataactagagcac-tcttcctcacttctactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctccctccttta 4543838  T
Q  183 gcatatgttgacgagctattcatttc 208  Q
    || | |||||||||||||||| ||||    
T  4543839 gcttgtgttgacgagctattcttttc 4543864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 7146522 - 7146346
Alignment:
Q  29 cattgattttgtagaggtcaattaatccta--gccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctact 126  Q
    |||||||||||||| |||||||||||||||  | |||||||||||||||| |||| |||||| || ||||||||||||| ||   | | || ||| ||||    
T  7146522 cattgattttgtagtggtcaattaatcctatagtcattggatttgtaacttatctttggctcctcgcctataaatagagttctcattcttcgcttttact 7146423  T
Q  127 caccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||||| ||||||| | ||||||||||||| ||||||||||||||  || ||||||| | | ||||||||| ||||||    
T  7146422 caccccaaaagttcttttgagttgtcaaataacttttctctctttaccttcctttaacttgtgttgacgacctattc 7146346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 22156522 - 22156448
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  22156522 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 22156448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 32025187 - 32025113
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  32025187 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 32025113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 39837106 - 39837032
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  39837106 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 39837032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 39845148 - 39845074
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  39845148 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 39845074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 25858804 - 25858730
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  25858804 aaaagttctcttgagttgttaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 25858730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 32000294 - 32000368
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  32000294 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ttttagcttgtgttgacgagctattcttttc 32000368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 32007263 - 32007337
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  32007263 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ttttagcttgtgttgacgagctattcttttc 32007337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 30779527 - 30779382
Alignment:
Q  52 aatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgt 151  Q
    |||| ||| |||||||||||||||| |||| |||||| || |||||||||     |||| |||||||||||||  ||| | ||||||| | |||||||||    
T  30779527 aatcatagtcattggatttgtaacttatctttggctcctcgcctataaat-----tcatttccctcacttctaaacacacaaaaagtttttttgagttgt 30779433  T
Q  152 caaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
     ||| ||||||||||||| ||||| |||||| | | |||||||||| ||||    
T  30779432 taaaaaacttttctctctactcccccctttaacttgtgttgacgagatatt 30779382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 30938825 - 30938899
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  30938825 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 30938899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 22162525 - 22162454
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||   ||| ||||||| | |||||||||||||||| ||||    
T  22162525 aaaagttctcttgagttgtcaaagaacttttctctctt---cct-ctttagcttgtgttgacgagctattcttttc 22162454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 16595348 - 16595538
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||| |    
T  16595348 agaaatcatgtcattgattttgtagaggtcaactaatcctagccattggatttgtaacttatctttggctcttcacctataaatagagttcctctccccc 16595447  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||    
T  16595448 acttctaatcaccccaaaagttctcttgagttgttaaagaacttttctctcttctccctcctttagcttgtgttgacgagcaattcttttc 16595538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 55081092 - 55081271
Alignment:
Q  29 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactca 128  Q
    |||||||||| ||  ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  55081092 cattgattttctaacggtcatttaatcctagccattggatttgtaacttatctttggctcttcacctataaattgagctcctctccctcacttctactca 55081191  T
Q  129 ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    | ||||||||| |||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  55081192 cactaaaagttctcttgagttgtcaaagagtttttctctcttctccctcctttagcttgtgttgacgagctattcttttc 55081271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 33722291 - 33722478
Alignment:
Q  22 atcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcactt 121  Q
    |||| |||||||||||| ||  |||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||    
T  33722291 atcaagtcattgattttctaacggtcaattaatcatagccattagatttgtaacttatctttggctcttcacctataaattgagctcctctccctcactt 33722390  T
Q  122 ctactca-ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||    
T  33722391 ctactcatcccaaaaagttcttttgagttgtcaaagaacttttctctcttctccctcctttagcttgtgttgacaagctattcttttc 33722478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 20513813 - 20513632
Alignment:
Q  27 gtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctact 126  Q
    |||||||||||| ||  |||||| |||| ||| |||||||||||| |||| |||| ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  20513813 gtcattgattttctaacggtcaactaattctaaccattggatttgcaacttatctttggctcaacacctataaattgagctcatctccctcacttttact 20513714  T
Q  127 caccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    || |  ||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  20513713 caactcaaaagttctcttgagttgtcaaaaaacttttctctcttctccctcctttagcttgtgttgacgagctattcttttc 20513632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 7216607 - 7216719
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  7216607 agaaatcatgtcattgattttgtagaggtcaactaatcttagccattgaatttgtaactcatctttgcctcttcacctacaaatagagctcctctccctc 7216706  T
Q  118 acttctactcacc 130  Q
    |||||||||||||    
T  7216707 acttctactcacc 7216719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 8817100 - 8816975
Alignment:
Q  83 tggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctccttta 182  Q
    |||||| ||||||||||||||||||||  | || |||   | | ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8817100 tggctcctcacctataaatagagctcacattccacacaatttcacacaccaaaagttatcttgagttgtcaaagaacttttctctcttctccctcattta 8817001  T
Q  183 gcatatgttgacgagctattcatttc 208  Q
    || | |||||||||||||||| ||||    
T  8817000 gcttgtgttgacgagctattcttttc 8816975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 2574745 - 2574907
Alignment:
Q  46 tcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttg 145  Q
    |||| |||| |||||| ||||||||||| || |||| ||| || ||| |||||||| |||| |  |||| |||||| |||| ||   ||||||| |||||    
T  2574745 tcaactaattctagccgttggatttgtatcttatctttggttcatcatctataaattgagcgccactccttcacttgtacttacatcaaaagttctcttg 2574844  T
Q  146 agttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||||||| |||||||||||||||||||| | | |||||||| ||||| ||||    
T  2574845 agttgtcaaagaacttttatctcttctccctcctttagcttgtattgacgaggtattcttttc 2574907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 39991319 - 39991471
Alignment:
Q  31 ttgattttgtagaggtcaattaatcctagccattggatttgtaactcatctct--ggctcttcacctataaatagagctcatctccctc--acttctact 126  Q
    |||||||||||  |||||| | ||| ||||||||| |||||||||| |||| |  |   | || ||||||| ||||| |||||||||||  |||||||||    
T  39991319 ttgattttgtaacggtcaaatgatcatagccattgaatttgtaacttatctgtatgatccctcgcctataactagagttcatctccctcttacttctact 39991418  T
Q  127 caccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcct 179  Q
    ||| | ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  39991419 cacaccaaaagttctctttagttgtcaaagaacttttctctcttctccctcct 39991471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 3381977 - 3381903
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  3381977 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 3381903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 19737546 - 19737472
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  19737546 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 19737472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 20548904 - 20548978
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  20548904 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 20548978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 39744963 - 39744889
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  39744963 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 39744889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 12613792 - 12613682
Alignment:
Q  92 acctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgtt 191  Q
    |||||||||||||||||   |  ||||||| |||  || | ||||||| ||||||||||||||| |||||||||||||||||||||||||| | | ||||    
T  12613792 acctataaatagagctctcattactcacttatacagacacaaaaagttctcttgagttgtcaaataacttttctctcttctccctcctttatcttgtgtt 12613693  T
Q  192 gacgagctatt 202  Q
    |||||||||||    
T  12613692 gacgagctatt 12613682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 3388715 - 3388649
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  3388715 tcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 3388649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 40684317 - 40684432
Alignment:
Q  93 cctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttg 192  Q
    ||||||||||||| || | | |||||||| |||| || | ||||||| ||||||||||||||||||||||||||||||||||  | |||||  | |||||    
T  40684317 cctataaatagagttcttattcctcacttgtactgacaccaaaagttttcttgagttgtcaaagaacttttctctcttctcctccatttagtttgtgttg 40684416  T
Q  193 acgagctattcatttc 208  Q
    ||||| ||||| ||||    
T  40684417 acgagatattcttttc 40684432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 50188318 - 50188392
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  50188318 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 50188392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 15017490 - 15017546
Alignment:
Q  114 cctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctctt 170  Q
    ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  15017490 cctcatttctactcaccccaaaagttatcttgatttgtcaaagaacttttctctctt 15017546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 8093816 - 8093742
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  8093816 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 8093742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 8102621 - 8102547
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  8102621 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 8102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 55792770 - 55792697
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||  ||||| | |||||||||||||||| ||||    
T  55792770 aaaagttctattgagttatcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattcttttc 55792697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 8658023 - 8658066
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  8658023 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 8658066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 38853887 - 38853961
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  38853887 aaaagttctcttgagttgtcaaagaatttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 38853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 18482918 - 18482845
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||  |  ||||||||||||||||||||||||||| |  ||||||||||||||| ||||    
T  18482918 aaaagttctcttgagttgtccca--acttttctctcttctccctcctttagcttgagttgacgagctattcttttc 18482845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 10566851 - 10566699
Alignment:
Q  27 gtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctact 126  Q
    |||||||||||| ||   ||||| | ||| ||| |||||||||||| |||||||| || ||| |||  |||||||||||||  |||| | |  | |||||    
T  10566851 gtcattgattttataattgtcaaatgatcttagtcattggatttgttactcatctttgcctcatcatttataaatagagcttctctctcgctatactact 10566752  T
Q  127 caccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctt 180  Q
     || ||||| ||| |||||||||||| || || |||||| ||||||||||||||    
T  10566751 tacactaaatgttctcttgagttgtc-aacaagttttctttcttctccctcctt 10566699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 48431684 - 48431872
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |    
T  48431684 agaaatcatgtcattgatt--gtagatgtcaactaatcctagccattggatttgtaactcatatttggctcttcacctataaatagagctcatctcccac 48431781  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||  | ||| ||||| |||||| ||||    
T  48431782 acttctactcaccccaaaagttctcttgagttgtcaaataacttttctctcttctccctcctttaggttgtgtcgacgaactattcttttc 48431872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 48435267 - 48435456
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||    
T  48435267 agaaatcatgtcattgattt-gtagatgtcaactaatcctagccattggatttgtaactcatctttggctctttacctataaatagagcccatctccttc 48435365  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||| | ||||||| |||| |||||| |||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||    
T  48435366 acttctactcactccaaaagttctcttaagttgtgaaagaacttttctctcttctccctcctttagcttgtgttgacaagctattcttttc 48435456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 16983666 - 16983492
Alignment:
Q  29 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactca 128  Q
    |||||||||| ||  |||||| ||||| ||| |||||||||||||| |||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||     
T  16983666 cattgattttttaacggtcaactaatcatagtcattggatttgtaattcatctttggcttttcacctataagtagagctcctctccctcacttctattct 16983567  T
Q  129 ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||||||||    
T  16983566 ccccaaaagttctcttgagttgtcaaataatttttctctcttctccctcctttagcttgtgttgacgagctattc 16983492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 4662880 - 4662695
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| | ||||||||||||| |||   |  |||    
T  4662880 agaaattatgtcattgattttgtagcggtcaactaatcctaggcattggatttgtaacttatctctggctccttacctataaatagaactctcatttctc 4662781  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    |||| || | |||| ||||||| ||||||||| ||||||||||||||| | || |||||  |||||| | ||||||||||||||||    
T  4662780 acttgtaattaccccaaaagttctcttgagttttcaaagaacttttctttgttatccctgttttagcttgtgttgacgagctattc 4662695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 13105178 - 13105104
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  13105178 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 13105104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 13111335 - 13111261
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  13111335 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 13111261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 14880850 - 14880776
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  14880850 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 14880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 14892665 - 14892591
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  14892665 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 14892591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 21638097 - 21638023
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  21638097 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 21638023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 261883 - 261957
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  261883 aaaagttctcttgagttgtcaaagatcttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 261957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 8606686 - 8606760
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||| ||||    
T  8606686 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgaactattcttttc 8606760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 8613147 - 8613221
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  8613147 aaaagttctcttgagttgccaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 8613221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 9524954 - 9524880
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  9524954 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 9524880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 23287666 - 23287592
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  23287666 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 23287592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 48060268 - 48060194
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||    
T  48060268 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttaacgagctattcttttc 48060194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 14887567 - 14887501
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctat 201  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||    
T  14887567 aaaagttctcttgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctat 14887501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 41007095 - 41007175
Alignment:
Q  127 caccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  41007095 cacccaaaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 41007175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 4313130 - 4313057
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||| ||||    
T  4313130 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattcttttc 4313057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 68679 - 68753
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | ||||||| |||||||| ||||    
T  68679 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ttttagcttgtgttgacaagctattcttttc 68753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 74772 - 74846
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | ||||||| |||||||| ||||    
T  74772 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ttttagcttgtgttgacaagctattcttttc 74846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 8154180 - 8154106
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | ||||||||| |||||| ||||    
T  8154180 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgaactattcttttc 8154106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 11181305 - 11181367
Alignment:
Q  145 gagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  11181305 gagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 11181367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 16030854 - 16030780
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||  |||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  16030854 aaaagttcacttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 16030780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 35491563 - 35491630
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagcta 200  Q
    |||||||  ||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  35491563 aaaagttcacttaagttgtcaaagaacttttctctcttctccctcatttagcttgtgttgacgagcta 35491630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 37468552 - 37468626
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||| |||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  37468552 aaaagttctcttgaattgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 37468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 41015880 - 41015954
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  41015880 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 41015954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 9554630 - 9554555
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaac-ttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  9554630 aaaagttctcttgagttgtcaaagaactttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 9554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 12558376 - 12558420
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctc 177  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  12558376 aaaagttctcttgagttgtcaaagaacttttctctcttctccctc 12558420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 16815390 - 16815317
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||    |||||| | |||||||||||||||| ||||    
T  16815390 aaaagttctcttgagttgtcaaagaacttttctctcttctcc--tatttagcttgtgttgacgagctattcttttc 16815317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 14398125 - 14398050
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||||||||||||||||||| || |||||||||||||||||  |||||| | ||||||| | |||||| ||||    
T  14398125 aaaagttatcttgagttgtcaaataatttttctctcttctcccttatttagcttttgttgaccaactattcttttc 14398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 17934598 - 17934639
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctcc 174  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  17934598 aaaagttctcttgagttgtcaaagaacttttctctcttctcc 17934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 44363065 - 44362997
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| | ||||||| ||||| ||||||||||||||||||||| |||||| | |||||||||||||||    
T  44363065 aaaagttctattgagtt-tcaaataacttttctctcttctccctcatttagcttgtgttgacgagctatt 44362997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 26386238 - 26386203
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26386238 tcttgagttgtcaaataacttttctctcttctccct 26386203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 32814454 - 32814640
Alignment:
Q  22 atcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcactt 121  Q
    ||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||| |||| |||| ||    
T  32814454 atcatgtcattgattttgtggtggtcaactaatcctagccaatggatttgtaacttatctttggctcttcacctataaattgagctcctctcactcaatt 32814553  T
Q  122 ctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||    
T  32814554 ctactcaccccaaaagttctcttgagttatcaaagaacttttctctcttctctctcctttagcttgtgttgacgagctattcttttc 32814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 35130340 - 35130175
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  35130340 agaaatcatgtcattgattt-gtagatgtcaactaatcctagtcattggatttgtaactcatctttgactcttcacctataaatagagctcctctccctc 35130242  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagc 184  Q
    ||||||||||| || ||||||| |||||||||||||||    |||||||||||||||||||||||||    
T  35130241 acttctactcatcccaaaagttctcttgagttgtcaaattttttttctctcttctccctcctttagc 35130175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 14042338 - 14042169
Alignment:
Q  44 ggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataa-----atagagctcatctccctcacttctactcaccctaaaagt 138  Q
    |||||| |||||||||| || |||||||||||| |||| |||||||||||||||||     || |||||| ||||||||||||||| |||| | ||||||    
T  14042338 ggtcaactaatcctagctatcggatttgtaacttatctttggctcttcacctataatataaattgagctcctctccctcacttctattcacaccaaaagt 14042239  T
Q  139 tatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |  ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  14042238 tcccttgagttgtcaaagaacttttctctcttctccctcctttagcttgtgttgacgagctattcttttc 14042169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 19899482 - 19899556
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  19899482 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 19899556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 25506066 - 25505992
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  25506066 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 25505992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 29610426 - 29610519
Alignment:
Q  86 ctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagt--tatcttgagttgtcaaagaacttttctctcttctccctc 177  Q
    ||||||| |||||||| |||||| ||||||| |||||||||||||| ||||||  | ||||||||||||||| |||||||||||||||| ||||    
T  29610426 ctcttcatctataaattgagctcctctcccttacttctactcaccccaaaagttctctcttgagttgtcaaaaaacttttctctcttctacctc 29610519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 14776232 - 14776093
Alignment:
Q  44 ggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatct 143  Q
    |||||| |||||||| ||||||||||||||||| |||| |||||| ||||||||||  ||||||||  | ||||||||||   ||| | ||||||| |||    
T  14776232 ggtcaactaatcctaaccattggatttgtaacttatctttggctcctcacctataagaagagctcacattcctcacttctttgcacaccaaaagttctct 14776133  T
Q  144 tgagttgtcaaagaacttttctctcttctccctcctttagc 184  Q
    |||||||||||| |  |||||||| ||||||| | ||||||    
T  14776132 tgagttgtcaaa-attttttctcttttctcccccatttagc 14776093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 28969449 - 28969613
Alignment:
Q  44 ggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatct 143  Q
    |||||| | ||| ||| |||||||| |  ||||||| | || ||| |||||||||||||||||||   | ||| |||| ||  ||| | |||| || |||    
T  28969449 ggtcaaatgatcttagtcattggatctaaaactcatatttgtctcctcacctataaatagagctctcattccttacttatagacacaccaaaacttctct 28969548  T
Q  144 tgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||| | || ||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  28969549 tgagttgtcatacaatttttctctcttctccctcctttagcttgtgttgacgagctattcttttc 28969613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 19720370 - 19720444
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  19720370 aaaagttctcttgagtagtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 19720444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 22232145 - 22232071
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  22232145 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 22232071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 22764408 - 22764335
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||| ||||    
T  22764408 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattcttttc 22764335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 18909620 - 18909686
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  18909620 tcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 18909686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 20459002 - 20458928
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  20459002 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 20458928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 22778657 - 22778589
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  22778657 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattc 22778589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 29600971 - 29600901
Alignment:
Q  131 ctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    |||||| || |||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||    
T  29600971 ctaaaatttctcttgagttgtcaaagaacttttctctcttctccctac-ttagcttatgttaacgagctatt 29600901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 30824062 - 30823988
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  30824062 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 30823988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 35091202 - 35091128
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  35091202 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 35091128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 28702424 - 28702356
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||  |||||| | |||||||||||||||    
T  28702424 aaaagttctcttgagttgtcaaagaacttttatctcttctccct-atttagcttgtgttgacgagctatt 28702356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 19714214 - 19714258
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctc 177  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  19714214 aaaagttctcttgagttgtcaaagaacttttctctcttctccctc 19714258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 3917128 - 3917054
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||   |||||| | |||||||||||| ||| ||||    
T  3917128 aaaagttctcttgagttgtcaaagaacttttctctcttctccc-aatttagcttgtgttgacgagcttttcttttc 3917054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 10984611 - 10984537
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  10984611 aaaagttctcttgagttgtcaaaaaacttttctctcttctccct-gtttagcttgtgttaacgagctattcttttc 10984537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 20452185 - 20452111
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||| |||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  20452185 aaaagttctcttgagttgtcaatgaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 20452111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 26896977 - 26897051
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  |||||| | |||||| ||||||||| ||||    
T  26896977 aaaagttctcttgagttgtcaaagaatttttctctcttctccct-atttagcttgtgttgatgagctattcttttc 26897051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 28002378 - 28002447
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccctcctt--tagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||| ||  || ||| |||||||||||||||| ||||    
T  28002378 tcttgagctgtcaaagaacttttctctcttctccctcatttataacatgtgttgacgagctattcttttc 28002447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 7245097 - 7245042
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgag 197  Q
    |||||||||||||||||||||||| |||||||||||  |||||| | ||||||||||    
T  7245097 tcttgagttgtcaaagaacttttcactcttctccct-atttagcttgtgttgacgag 7245042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 12667062 - 12667000
Alignment:
Q  145 gagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||| |||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  12667062 gagttgtcaatgaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 12667000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 36725412 - 36725233
Alignment:
Q  29 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactca 128  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||  ||||||||||||||||||    
T  36725412 cattgattttctaacggtcaattaatcctagccattggatttgtaacttatctttggctcttcacctataaattgagctcccctccctcacttctactca 36725313  T
Q  129 ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    | | ||||||| | ||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  36725312 caccaaaagttcttttgagttgtcaaataacttttctctcttctccctcctttagcttgtgttgacgagctattcttttc 36725233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 12906846 - 12906667
Alignment:
Q  29 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactca 128  Q
    |||||||||| ||  |||||| |||||||| ||||||||||||||||| |||| || |||||||||||||||| |||||| |||||||||||||||||||    
T  12906846 cattgattttctaacggtcaactaatcctaaccattggatttgtaacttatctttgactcttcacctataaattgagctcctctccctcacttctactca 12906747  T
Q  129 ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
      | ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||||    
T  12906746 aaccaaaagttatcttgagttgtcaaagaacttttctatcttctccctcctttagcttgtgttgacgagctattcttttc 12906667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 24159194 - 24159371
Alignment:
Q  18 agaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctc 117  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||| |||||| |    
T  24159194 agaaattatgtcattgattttgtagaggtcaactaatcctagccattggatttataactcatctttgactcttcacctataaataaagctcttctcccac 24159293  T
Q  118 acttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacg 195  Q
    | |||||||||||| ||||||| |||||||||||||||  ||||||||||||| | |||| |||||| | ||||||||    
T  24159294 atttctactcaccccaaaagttctcttgagttgtcaaatgacttttctctctttttcctcttttagcttgtgttgacg 24159371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 33380319 - 33380498
Alignment:
Q  29 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactca 128  Q
    |||||||||| ||  ||| || ||||||||| ||||| |||||||||| |||| ||||||||||||||||||| |||||| |||||| ||||||||||||    
T  33380319 cattgattttctaacggtgaactaatcctagtcattgaatttgtaacttatctttggctcttcacctataaattgagctcttctcccccacttctactca 33380418  T
Q  129 ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    | | ||||||| | ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||    
T  33380419 caccaaaagttcttttgagttgtcaaagaacttttctctctgctccctcctttagcttgtgttgacgagctattcttttc 33380498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 23191405 - 23191591
Alignment:
Q  22 atcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcactt 121  Q
    ||||||||||||||||||| | |||||| |||||||| ||||||||||||||||| |||| || ||| |||||||||||||||||||   | ||||||||    
T  23191405 atcatgtcattgattttgtggtggtcaactaatcctaaccattggatttgtaacttatctttgactcctcacctataaatagagctctctttcctcactt 23191504  T
Q  122 ctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    || ||||||| ||||| | | ||||||||||||||||| ||||||||||||||||| |||||| | |||||||||| ||||| ||||    
T  23191505 cttctcaccccaaaagatcttttgagttgtcaaagaacatttctctcttctccctcatttagcttgtgttgacgagttattcttttc 23191591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 2493205 - 2493392
Alignment:
Q  22 atcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcactt 121  Q
    ||||||||||||||||||| | || ||| |||||||| |||||| |||||||||| |||| |||||| |||||||||||||||||||   | ||||||||    
T  2493205 atcatgtcattgattttgtggtggccaactaatcctaaccattgaatttgtaacttatctttggctcctcacctataaatagagctctcattcctcactt 2493304  T
Q  122 ctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttca 209  Q
    ||  |||| | ||||||| | ||||||||||||| ||||||||||||||||||||| |||||| | |||||||||| ||||| |||||    
T  2493305 ctgatcacaccaaaagttcttttgagttgtcaaaaaacttttctctcttctccctcatttagcttgtgttgacgagttattcttttca 2493392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 19309033 - 19309179
Alignment:
Q  62 attggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaactt 161  Q
    |||| |||||||||| |||| ||| ||||||||||||||| |||||| ||||||||||||||||| |||| ||||||| ||||||||||| |||||||||    
T  19309033 attgaatttgtaacttatctttggttcttcacctataaattgagctcctctccctcacttctacttaccccaaaagttctcttgagttgttaaagaactt 19309132  T
Q  162 ttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||| |||||| ||||||||| | |||||||||||||||| ||||    
T  19309133 ttctcttttctccttcctttagcttgtgttgacgagctattcttttc 19309179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 31064660 - 31064486
Alignment:
Q  29 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactca 128  Q
    |||| ||||||||  |||||| | ||| |||||||||||| |  ||||||||| ||| || ||||||||||||| ||||| | | |||||||||| ||||    
T  31064660 catttattttgtaacggtcaaatgatcgtagccattggatctaaaactcatctttggttcctcacctataaatatagctcttgttcctcacttcttctca 31064561  T
Q  129 ccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||    
T  31064560 ccacaaaagttctcttgagttgtcaaagaatttttctctcttctccctcctttagcttgtgttgacgaactattc 31064486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 28857450 - 28857606
Alignment:
Q  28 tcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactc 127  Q
    ||||| ||||||||   ||||| | ||| |||||||||||| |  ||||||||| |||||| ||||||||||||||||||| | | ||||||||||||||    
T  28857450 tcattaattttgtaactgtcaaatgatcttagccattggatctaaaactcatctttggctcctcacctataaatagagctcttgttcctcacttctactc 28857549  T
Q  128 accctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagc 184  Q
    || | ||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  28857550 actccaaaagttcttttgagttgtcaaagaacttttctgtcttctccctcctttagc 28857606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 27761234 - 27761410
Alignment:
Q  28 tcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactc 127  Q
    ||||| ||||||||  |||||| | ||| | ||| ||||||||| ||||||| | |||||| ||||||||||||||||| | ||| ||||||||||||||    
T  27761234 tcattaattttgtaacggtcaaatgatcttggccgttggatttg-aactcatgtgtggctcctcacctataaatagagcac-tcttcctcacttctactc 27761331  T
Q  128 accctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||  ||||||| ||  ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  27761332 acctcaaaagttctc--gagttgtcaaataacttttctctcttctccctcctttagcttgtgttgacgagctattcttttc 27761410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 25661278 - 25661425
Alignment:
Q  61 cattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaact 160  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| ||   | | ||| || ||  |||   ||||||| ||||||||||||||||||||    
T  25661278 cattggatttgtaacttatctctgcctcttcacctataaatagagttctcattcttcatttgtaaacacaacaaaagttctcttgagttgtcaaagaact 25661377  T
Q  161 tttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||| |||||||||||| || | |||||||||||||||||||||    
T  25661378 tttctctcatctccctcctttggcttgtgttgacgagctattcatttc 25661425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 9352765 - 9352880
Alignment:
Q  93 cctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttg 192  Q
    |||||||||| || || | |||||||||| ||||||| | ||||||| ||||||||| |||||| | ||||||||||||||||||||||| | | |||||    
T  9352765 cctataaatatagatcttatccctcacttatactcacaccaaaagttctcttgagttttcaaagcatttttctctcttctccctcctttatcttctgttg 9352864  T
Q  193 acgagctattcatttc 208  Q
    ||||||||||| ||||    
T  9352865 acgagctattcttttc 9352880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 9327919 - 9328034
Alignment:
Q  93 cctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttg 192  Q
    |||||||||| || |||| |||||||||| |||| || | ||||||| ||||||||| |||||| | ||||||||||||||||||||||| | | |||||    
T  9327919 cctataaatatagatcatatccctcacttatacttacaccaaaagttctcttgagttttcaaagcatttttctctcttctccctcctttatcttctgttg 9328018  T
Q  193 acgagctattcatttc 208  Q
    | ||||||||| ||||    
T  9328019 atgagctattcttttc 9328034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 8770204 - 8770130
Alignment:
Q  134 aaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||| ||||    
T  8770204 aaagttctcttgagttgtcaaagaatttttctctcttctccctcctttagcttttgttgaagagctattcttttc 8770130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 15473402 - 15473333
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  15473402 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattc 15473333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 51968458 - 51968527
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| |||||| | |||||||||||||||    
T  51968458 aaaagttctcttgagttgtcaaagaatttttctctcttctccctcatttagcttgtgttgacgagctatt 51968527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 20429887 - 20429961
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  20429887 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ttttagcttgtgttgacgagctattcttttc 20429961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 44832088 - 44832014
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||    
T  44832088 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttaacgagctattcttttc 44832014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 47108902 - 47108976
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||    
T  47108902 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttaacgagctattcttttc 47108976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 2416239 - 2416171
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||    
T  2416239 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctatt 2416171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 3432436 - 3432362
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||| |||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  3432436 aaaagttctcttgagttgtcaatgaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 3432362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 19367992 - 19368066
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  |||||| | ||||||| |||||||| ||||    
T  19367992 aaaagttctcttgagttgtcaaagaatttttctctcttctccct-ttttagcttgtgttgaccagctattcttttc 19368066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 31540497 - 31540540
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  31540497 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 31540540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 31549066 - 31549109
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  31549066 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 31549109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 32987853 - 32987765
Alignment:
Q  94 ctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctccttta 182  Q
    |||||||| |||||| |||||||||||| |||||||   ||||||| | ||||||| ||||| ||||||||| || |||  ||||||||    
T  32987853 ctataaattgagctcttctccctcacttttactcacagcaaaagtttttttgagttttcaaaaaacttttctgtcatctttctccttta 32987765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 9252952 - 9252903
Alignment:
Q  90 tcacctataaatagagctcatctccctcacttctactcaccctaaaagtt 139  Q
    ||||||||||||| ||||| |||||||||||| ||||||| | |||||||    
T  9252952 tcacctataaatatagctcctctccctcacttatactcacaccaaaagtt 9252903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 6897790 - 6897966
Alignment:
Q  27 gtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctact 126  Q
    |||||||||||| ||  |||||| ||||| ||| ||||| |||||||||| |||| ||||||||||||||||||| ||| |  || ||||||||||||||    
T  6897790 gtcattgattttctaacggtcaactaatcatagtcattgaatttgtaacttatctttggctcttcacctataaattgagtttttccccctcacttctact 6897889  T
Q  127 caccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
     |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  6897890 aaccccaaaagttctcttgagttgtcaaagaacttttctctcttctccctcctttagcttgtgttgatgagctattc 6897966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 29477713 - 29477827
Alignment:
Q  94 ctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttga 193  Q
    |||||||| |||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29477713 ctataaattgagcccatctccctcacttctactcacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccctcctttagcttgtgttga 29477812  T
Q  194 cgagctattcatttc 208  Q
     ||||||||| ||||    
T  29477813 tgagctattcttttc 29477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 25831790 - 25831914
Alignment:
Q  76 tcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccc 175  Q
    |||||| |||||| ||||||||||||||||||    |  ||||||||| || || | ||||||| ||||||||||||||||||||||| ||||||||||     
T  25831790 tcatctttggctcctcacctataaatagagctttcatttctcacttcttcttacaccaaaagttctcttgagttgtcaaagaacttttatctcttctcct 25831889  T
Q  176 tcctttagcatatgttgacgagcta 200  Q
    || |||||| |||||||| ||||||    
T  25831890 tcatttagcttatgttgatgagcta 25831914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 28415659 - 28415733
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  28415659 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 28415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 46299502 - 46299384
Alignment:
Q  90 tcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatg 189  Q
    |||||||||||||||||||   ||||||||   | | ||| | ||||||| ||||| |||||||||||||||||||| |||||||||| |||||| | ||    
T  46299502 tcacctataaatagagctctcatccctcacaatttcacacaccaaaagttctcttgggttgtcaaagaacttttctcacttctccctcatttagcttgtg 46299403  T
Q  190 ttgacgagctattcatttc 208  Q
    |||||||||||||| ||||    
T  46299402 ttgacgagctattcttttc 46299384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 1858104 - 1858033
Alignment:
Q  136 agttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  1858104 agttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 1858033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 34132368 - 34132294
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  34132368 aaaagttctattgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 34132294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 34138680 - 34138606
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  34138680 aaaagttctattgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 34138606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 6851548 - 6851480
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||    
T  6851548 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctatt 6851480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 4333196 - 4333333
Alignment:
Q  53 atcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttg-- 150  Q
    |||||||||||| ||||||  ||||||||  ||||  |||||| |||||||||| ||||||| ||| |||||||| | | ||||||||||| ||||||      
T  4333196 atcctagccatttgatttgctactcatctacggcttatcacctctaaatagagcacatctccttcagttctactcgcaccaaaagttatctagagttgag 4333295  T
Q  151 --tcaaagaacttttctctcttctccctcctttagcat 186  Q
       |||  |||||||||||||||||||||||| |||||    
T  4333296 ttgcaataaacttttctctcttctccctccttcagcat 4333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 4337443 - 4337580
Alignment:
Q  53 atcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttg-- 150  Q
    |||||||||||| ||||||  ||||||||  ||||  |||||| |||||||||| ||||||| ||| |||||||| | | ||||||||||| ||||||      
T  4337443 atcctagccatttgatttgctactcatctacggcttatcacctctaaatagagcacatctccttcagttctactcgcaccaaaagttatctagagttgag 4337542  T
Q  151 --tcaaagaacttttctctcttctccctcctttagcat 186  Q
       |||  |||||||||||||||||||||||| |||||    
T  4337543 ttgcaataaacttttctctcttctccctccttcagcat 4337580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 12978998 - 12979072
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  12978998 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 12979072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 13832021 - 13832095
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  13832021 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 13832095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 13840051 - 13840125
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  13840051 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 13840125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 18303925 - 18303851
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  18303925 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 18303851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 32158613 - 32158556
Alignment:
Q  142 cttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagct 199  Q
    |||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||    
T  32158613 cttgagttgtcaaagaacttttttctcttctccctccttcagcttgtgttgacgagct 32158556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 4831882 - 4831839
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  4831882 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 4831839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 43005203 - 43005128
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaac-ttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||  |||||| | |||||||||| ||||| ||||    
T  43005203 aaaagttctcttgagttgtcaaagaactttttctctcttctccct-atttagcttgtgttgacgagttattcttttc 43005128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 44412849 - 44412806
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  44412849 aaaagttctcttgagttgtcaaagaatttttctctcttctccct 44412806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 20542427 - 20542364
Alignment:
Q  144 tgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||||||||||||||||||| ||  |||||| | ||||||||| |||||| ||||    
T  20542427 tgagttgtcaaagaacttttctctcttctctct-atttagcttgtgttgacgacctattcttttc 20542364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 46461653 - 46461578
Alignment:
Q  133 aaaagttatcttgagttgtcaaaga-acttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||   |||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  46461653 aaaagttctcttgagttgtcaaagacttttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 46461578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 23615846 - 23615894
Alignment:
Q  161 tttctctcttctccctcctttagcatatgttgacgagctattcatttca 209  Q
    ||||||||||||||||| |||||| | ||||||||| |||||| |||||    
T  23615846 tttctctcttctccctcatttagcttgtgttgacgaactattcttttca 23615894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 18264896 - 18265075
Alignment:
Q  28 tcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactc 127  Q
    ||||| ||||||||  |||||| | ||| | ||| ||||||||| ||||||||| |||||| ||| ||||||||||||| | ||| ||||||||||||||    
T  18264896 tcattaattttgtaacggtcaaatgatcttggccgttggatttg-aactcatctttggctcctcatctataaatagagcac-tcttcctcacttctactc 18264993  T
Q  128 accctaaaagttatcttgagttgtcaaagaacttttct-ctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||| ||||||| |||| |||||||||| ||||||| | || |||||||||||||||| | |||||||||||||||| ||||    
T  18264994 accccaaaagttctcttaagttgtcaaataacttttttcctgttctccctcctttagcttgtgttgacgagctattcttttc 18265075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 15591304 - 15591144
Alignment:
Q  22 atcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcactt 121  Q
    |||||||||||||| |||||| | |||| ||||||||  |||||||||||||||| |||| || ||| |||||||||||||||||||   | | ||||||    
T  15591304 atcatgtcattgatattgtagcgatcaactaatcctaatcattggatttgtaacttatctttgtctcctcacctataaatagagctctcattcttcactt 15591205  T
Q  122 ctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctccttta 182  Q
      ||||| || ||||||| | |||||||  |||| ||||||| ||||||||||||||||||    
T  15591204 gcactcatcccaaaagttcttttgagttaacaaataacttttttctcttctccctccttta 15591144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 10058307 - 10058382
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||    
T  10058307 aaaagttctattgagttgtcaaagaacttttctctcttctccctcatttagcttgtgttgacgagctattcttttc 10058382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 24956373 - 24956299
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  24956373 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 24956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 24964833 - 24964759
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  24964833 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 24964759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 25526713 - 25526787
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  25526713 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 25526787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 25533395 - 25533469
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  25533395 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 25533469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 28844462 - 28844536
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  28844462 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 28844536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 28853072 - 28853146
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  28853072 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 28853146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 36448777 - 36448851
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  36448777 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 36448851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 36455161 - 36455235
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  36455161 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacgagctattcttttc 36455235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 30249847 - 30249921
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||| ||||    
T  30249847 aaaagttctcttgagttgtcaaagaacttttctctcttctccctac-ttagcttgtgttgacgagctattcttttc 30249921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 37048890 - 37048964
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||    
T  37048890 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttaacgagctattcttttc 37048964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 40015424 - 40015492
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||| | |||||||||||||||    
T  40015424 aaaagttatcttgagttgtcaaataacttttctctcttctccct-atttagcttgtgttgacgagctatt 40015492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 20092305 - 20092232
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||| ||||    
T  20092305 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattcttttc 20092232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 20099182 - 20099109
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||| ||||    
T  20099182 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagcttgtgttgacgagctattcttttc 20099109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 1727700 - 1727626
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  1727700 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 1727626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 20639398 - 20639324
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||| |||||||||||||||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  20639398 aaaagttctcttgaattgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctattcttttc 20639324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 23349615 - 23349540
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  23349615 aaaagttctcttgagttgtcaaagaatttttctctcttctccctattttagcttgtgttaacgagctattcttttc 23349540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 25041802 - 25041728
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | ||||||| |||||||| ||||    
T  25041802 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacaagctattcttttc 25041728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 26186183 - 26186109
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  |||||| | |||||||||||||||| ||||    
T  26186183 aaaagttctcttgagttgtcaaagaatttttctctcttctccct-ttttagcttgtgttgacgagctattcttttc 26186109  T

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Target: chr5; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 43597587 - 43597513
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  43597587 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 43597513  T

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Target: chr5; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 43630381 - 43630307
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||| ||||    
T  43630381 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttaacgagctattcttttc 43630307  T

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Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 23377834 - 23377761
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||  | |||||||||||||||| ||||    
T  23377834 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagtttgtgttgacgagctattcttttc 23377761  T

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Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 1285751 - 1285826
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | ||||||||||||| ||||||| |||||||||||||||||| | |  ||||||||||||||| ||||    
T  1285751 aaaagttctattgagttgtcaaaaaacttttatctcttctccctcctttaacttgcgttgacgagctattcttttc 1285826  T

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Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 15956531 - 15956457
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||  |||||| | |||| ||||||||||| ||||    
T  15956531 aaaagttctcttgagttgtcaaagaacttttatctcttctccct-atttagcttgtgttaacgagctattcttttc 15956457  T

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Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 16563759 - 16563822
Alignment:
Q  145 gagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||||||||||||||||||||||  ||||| | ||||||||| |||||| ||||    
T  16563759 gagttgtcaaagaacttttctctcttctccctctattagcttgtgttgacgaactattcttttc 16563822  T

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Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 13358936 - 13359003
Alignment:
Q  141 tcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||||||||||||||  || ||||||||||  |||||||||| | |||||||||||||||| ||||    
T  13358936 tcttgagttgtcaaagagtttctctctcttctttctcctttagcttgtgttgacgagctattcttttc 13359003  T

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Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 16747724 - 16747799
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||| |||||||| || ||||||||| |||  ||| |||| | | |||||||||||||||||||||    
T  16747724 aaaagttctcttgaattgtcaaataatttttctctcctctttctcatttaccttgtgttgacgagctattcatttc 16747799  T

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Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 38227516 - 38227436
Alignment:
Q  93 cctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccc 175  Q
    |||||||||| |||||   | |||||||| ||| ||||  |||||||||||||| |||||||||||||||||| | |||||||    
T  38227516 cctataaatatagctctcattcctcacttatacacacc--aaaagttatcttgacttgtcaaagaacttttcttttttctccc 38227436  T

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Target: scaffold0226 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 5738 - 5827
Alignment:
Q  114 cctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    |||||||| ||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  5738 cctcacttatacacacacaaaaagttttcttgagttgtcaaagaacttttctctcttctccctccttcagcttgtgttgacgagctattc 5827  T

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Target: scaffold0065 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 43777 - 43707
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattc 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  43777 aaaagttctcttgagttgtcaaagaacttttctctcttctccctcatttagcttgtgttgacgagctattc 43707  T

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Target: scaffold0009 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 163843 - 163957
Alignment:
Q  94 ctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttga 193  Q
    |||||||||||||||   | |||||||| |||  || | ||||||| |||| |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  163843 ctataaatagagctctcattcctcacttatacaaacaccaaaagttctcttaagttgtcaaaaaacttttctctcttctccctcctttagcttgtgttga 163942  T
Q  194 cgagctattcatttc 208  Q
    | |||||||| ||||    
T  163943 ctagctattcttttc 163957  T

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Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 148721 - 148777
Alignment:
Q  152 caaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||    
T  148721 caaagaacttttctctcatctccctcctttagcatatgttgacaaactattcttttc 148777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 919 - 845
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||| ||||    
T  919 aaaagttctcttgagttgtcaaagaacttttctcgcttctccct-ctttagcttgtgttgacgagctattcctttc 845  T

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Target: scaffold0085 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 18283 - 18209
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||| ||||    
T  18283 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgacaagctattcttttc 18209  T

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Target: scaffold0031 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 33259 - 33184
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||| || ||||| ||||    
T  33259 aaaagttctcttgagttgtcaaagaacttttctctcttctccctcatttagcttgtgttgacaagttattcttttc 33184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 9431 - 9507
Alignment:
Q  131 ctaaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||| ||||    
T  9431 ctaaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgaagagctattcttttc 9507  T

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Target: scaffold0027 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 24116 - 24184
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||    
T  24116 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-ctttagcttgtgttgatgagctatt 24184  T

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Target: scaffold0586 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 5319 - 5227
Alignment:
Q  83 tggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttgtcaaagaacttttctctcttctccc 175  Q
    |||||| |||| |||||||| ||||||  ||||||||||||||| |  | ||||||| | |||||||||||||||||| ||||||||||||||    
T  5319 tggctcctcacttataaatatagctcacatccctcacttctacttaaaccaaaagttctattgagttgtcaaagaactattctctcttctccc 5227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 89406 - 89332
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||| | |||||||||||| ||| ||||    
T  89406 aaaagttctcttgagttgtcaaagaacttttctctcttctccct-atttagcttgtgttgacgagctgttcttttc 89332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 66338 - 66412
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| ||||||| | |||||||||| ||||| ||||    
T  66338 aaaagttctcttgagttgtcaaagaactttcctctcttctccct-ctttagcttgtgttgacgagttattcttttc 66412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 7148 - 7082
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagct 199  Q
    ||||||| |||||||||||||||| |||||||||||||||||||  |||||| | ||||||||||||    
T  7148 aaaagttctcttgagttgtcaaagcacttttctctcttctccctattttagcttgtgttgacgagct 7082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 39751 - 39683
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctatt 202  Q
    ||||||| |||||||||||||||||||||||||||||||||| |  |||||| | |||||||||||||||    
T  39751 aaaagttctcttgagttgtcaaagaacttttctctcttctccat-gtttagcttgtgttgacgagctatt 39683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 12867 - 12730
Alignment:
Q  53 atcctagccattggatttgtaactcatctctggctcttcacctataaatagagctcatctccctcacttctactcaccctaaaagttatcttgagttg-- 150  Q
    |||||||||||| ||||||  |||||| |   |||  |||||| |||||||||| ||||||| ||||||||||||||   ||||||||||| ||||||      
T  12867 atcctagccatttgatttgctactcatttactgcttatcacctctaaatagagcacatctccttcacttctactcacatcaaaagttatctagagttgag 12768  T
Q  151 --tcaaagaacttttctctcttctccctcctttagcat 186  Q
       |||  |||||||||||||||||||||||| |||||    
T  12767 ttgcaataaacttttctctcttctccctccttcagcat 12730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 14631 - 14704
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  ||||  | |||||||||||||||| ||||    
T  14631 aaaagttctattgagttgtcaaagaacttttctctcttctccctc--ttagtttgtgttgacgagctattcttttc 14704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 16178 - 16221
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  16178 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 16221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1699 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 927 - 862
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccctcctttagcatatgttgacgagct 199  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||  |||||| | ||||||||||||    
T  927 aaaagttctcttgagttgtcaaagaacttttctttcttctccct-atttagcttgtgttgacgagct 862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 4857 - 4802
Alignment:
Q  153 aaagaacttttctctcttctccctcctttagcatatgttgacgagctattcatttc 208  Q
    |||||| ||||||||||| |||||| |||||| |||||||||||||||||| ||||    
T  4857 aaagaatttttctctcttttccctcatttagcttatgttgacgagctattcttttc 4802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 32763 - 32720
Alignment:
Q  133 aaaagttatcttgagttgtcaaagaacttttctctcttctccct 176  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||    
T  32763 aaaagttcttttgagttatcaaagaacttttctctcttctccct 32720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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