View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_57 (Length: 212)
Name: NF13734_low_57
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_57 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 34963168 - 34963373
Alignment:
| Q |
7 |
ctatctgaaaagagggaatacacaaaagttggacttgattagaaaaactactggtacaatgttgttttgttcacttctgatgagcaggatggtacaaatt |
106 |
Q |
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| T |
34963168 |
ctatctgaaaagagggaatacacaaaagttggacttgattagaaaaactactgttacaatgttgttttgatcacttctgatgagcaggatggtacaaatt |
34963267 |
T |
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| Q |
107 |
tggagagatcatcactaagcagaagcagagttctcgtgcagtaatacatattctcggctgaaataagaagnnnnnnnnccattccacaataaataaatat |
206 |
Q |
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| T |
34963268 |
tggagagatcatcactaagcagaagcagagttctcgtgcagtaatacatattctcggctgaaataagaagaaaaaaaaccattccacaataaataaatat |
34963367 |
T |
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| Q |
207 |
acgttt |
212 |
Q |
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|||||| |
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| T |
34963368 |
acgttt |
34963373 |
T |
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Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 18421306 - 18421486
Alignment:
| Q |
4 |
aatctatctgaaaagagggaatacacaaaagttggacttgattagaaaaactactggtac--aatgttgttttgttcacttctgatgagcaggatggtac |
101 |
Q |
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||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
18421306 |
aatctttctgaaaagaaggaatacacaacagttggacttgattagaaaaactactggtacaaaatgttgttttgatcacttctgatgagcaggatggtac |
18421405 |
T |
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| Q |
102 |
aaatttggaga-------gatcatcactaagcagaagcagagttctcgtgcagtaatacatattctcggctgaaataagaa |
175 |
Q |
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| T |
18421406 |
agatatggagaattcaatgctgatcacgaagcagaagcagagttctcgtgcagtaatacatattctcggctgaaattagaa |
18421486 |
T |
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