View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_6 (Length: 572)
Name: NF13734_low_6
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 183 - 539
Target Start/End: Original strand, 44628107 - 44628463
Alignment:
| Q |
183 |
ggatggtgaaaagcttgacacaaactttaagcataaaggtacagacaaagtgaatgttagggatcataaatacagcaagttggaaagaattgaatcaaaa |
282 |
Q |
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| T |
44628107 |
ggatggtgaaaagcttgacacaaactttaagcataaaggtacagacaaagtgaatgttagggatcataaatacagcaagttggaaaaaattgaatcaaaa |
44628206 |
T |
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| Q |
283 |
ttggctaaagcaaggtattccatcaaagaagctagcaaagttcaaaatttaacatcaacccaccaagaccaagattatgttcctcaaggaccaatttaca |
382 |
Q |
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| T |
44628207 |
ttggctaaagcaaggtattccatcaaagaagctagcaaagttcaaaatttaacatcaacccaccaagaccaagattatgttcctcaaggaccaatttaca |
44628306 |
T |
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| Q |
383 |
gaaactccaatgcttttcataggtgcatttgatttcccgcctgcaaatgatgatattaagttgttggcgccgtaaaaagttgaactcgttgttgatattt |
482 |
Q |
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| T |
44628307 |
gaaaccccaatgcttttcataggtacattttattttcagcctacaaatgatgattttaattcgttgacgccgtaaaaagttgaactcgttgttgatattt |
44628406 |
T |
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| Q |
483 |
tttgtccacaggaggtatctatagatggggaaggtgttcaagatttttgtgtatgag |
539 |
Q |
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| T |
44628407 |
tttgtccacaggagttatctagagatggagaaggtgttcaagatttttgtgtatgag |
44628463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44627942 - 44628058
Alignment:
| Q |
1 |
tcatcaagtgcatttccattacaaacttttgctccatatgattctcatgtaagcaataaactttttccatttattaacctttttcctttaataaataact |
100 |
Q |
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| T |
44627942 |
tcatcaagtgcatttccattacaaacttttgctccatatgattctcatgtaagcaataaacttttttcatttattaacctttttcctttaataaataact |
44628041 |
T |
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| Q |
101 |
atagtgtactttctctc |
117 |
Q |
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| T |
44628042 |
atagtgtactttctctc |
44628058 |
T |
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