View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13734_low_8 (Length: 476)
Name: NF13734_low_8
Description: NF13734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13734_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 45307545 - 45307987
Alignment:
| Q |
20 |
aaagtaagatcatgcaaattttgaacggttttcttaattcaaagtttgaagtctttcattttcttgctttagatccccaatctctttttgtaaatagtga |
119 |
Q |
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| T |
45307545 |
aaagtaagatcatgcaaattttgaacggttttcttaattcaaagtttgaagtctttcattttcttgctttagatccccaatctctttttgtaaatagtga |
45307644 |
T |
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| Q |
120 |
cttttgtttgtcaaaaaactttcaatatttctaagattttcaaaatcatttttaagttgtccataaaataggcaataacttagattagttacctcattaa |
219 |
Q |
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| T |
45307645 |
catttgtttgtcaaaaaactttcaatatttctaagattttcaaaatcatttttaagttgtccataaaataggcaataacttagattagttacctcattaa |
45307744 |
T |
|
| Q |
220 |
ttccataatcaaatttagcattgaggcacatgtttgcatcttcatcttgttccaattttgaaaacataccttttctgcttgtttcgaggacattcattct |
319 |
Q |
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| T |
45307745 |
ttccataatcaaatttagcattgaggcacatgtttgcatcttcatcttgttccaattttgaaaacataccttttctgcttgtttcgaggacattcattct |
45307844 |
T |
|
| Q |
320 |
tataatgtcatagcttatcacattcataggacatgacttgactcttgccatcnnnnnnngaaaacataccttctctgcttgtttcgttgtacatcaagaa |
419 |
Q |
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| T |
45307845 |
tacaatgtcatagcttatcacattcataggacatgacttgactcttgccatctctttttgaaaacataccttctctgcttgtttcgttgtacatcaagaa |
45307944 |
T |
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| Q |
420 |
gtattacttcagtaaatgacttctcaaagtatgcaagtataat |
462 |
Q |
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| T |
45307945 |
gtattacttcagtaaatgacttctcaaagtatgcaagtataat |
45307987 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 5523286 - 5523246
Alignment:
| Q |
153 |
agattttcaaaatcatttttaagttgtccataaaataggca |
193 |
Q |
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| T |
5523286 |
agattttcaaaatcattttcaagttgttcataaagtaggca |
5523246 |
T |
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