View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_high_1 (Length: 836)
Name: NF13735_high_1
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 720; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 16 - 824
Target Start/End: Complemental strand, 25745781 - 25744981
Alignment:
| Q |
16 |
cagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttattggctagtgg |
115 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745781 |
cagtaagagcaagaagaaatgaggttttgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttattggctagtgg |
25745682 |
T |
|
| Q |
116 |
tggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcgaatttcttgcattgttttaaagagcatactgcggcagtcaaagctctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745681 |
tggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcaaatttcttgcattgttttaaagagcatactgcggcagtcaaagctctc |
25745582 |
T |
|
| Q |
216 |
gattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaagaggaactaacatttgca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25745581 |
gattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaagaggaaccaacatttgca |
25745482 |
T |
|
| Q |
316 |
gcatagataccaaagctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaacca |
415 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25745481 |
gcatagataccaaagctcaggtttgtggattacaatggaatagacattacaaagagatattaagtggtcatggctttagtacaagtccagaacacaacca |
25745382 |
T |
|
| Q |
416 |
actgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccctcatacttcgagagtccttcatctttctcaggtatgcttcaagtcatta |
515 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
25745381 |
actgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtcctccatctttctcaggtatgcttcaagtcatca |
25745282 |
T |
|
| Q |
516 |
ttacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgtgaatttttaaagcatgtaataatgtgagtacagtcattcattatttcat |
615 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||| |
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| T |
25745281 |
ttacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtgaatttttatagcatgtaagaatgcgagtacagtcatt--------cat |
25745190 |
T |
|
| Q |
616 |
tggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatgaatgaaaccacttaaactttatcaa |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25745189 |
tggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatgaatcaaaccacttaaactttatcaa |
25745090 |
T |
|
| Q |
716 |
ggtgattatttcattcaagttacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttt |
815 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745089 |
ggtgattatttcattcaagttacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttt |
25744990 |
T |
|
| Q |
816 |
tgggatatt |
824 |
Q |
| |
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||||||||| |
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| T |
25744989 |
tgggatatt |
25744981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 370 - 824
Target Start/End: Original strand, 4348615 - 4349074
Alignment:
| Q |
370 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccc |
466 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
4348714 |
T |
|
| Q |
467 |
tcatacttcgagagtccttcatctttctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgt |
566 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4348715 |
ccatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgt |
4348814 |
T |
|
| Q |
567 |
gaatttttaaagcatgtaataatgtgagtacagtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttc--------atat |
658 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||||||| | || |
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| T |
4348815 |
gaatttttaaagcatgtaataatgtgagtacaatca--------ttcattggcaagagcatctaatatagttgcttgggattgttttcaacaagtgacat |
4348906 |
T |
|
| Q |
659 |
aaacttcaactttgttaaaacatataaacatgaatgaaaccacttaaactttatcaaggtgattatttcattcaagt--tacactaatgctcttatgtct |
756 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
4348907 |
caacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaaggggattatttctttcaagttatacactaatgctcttatgtct |
4349006 |
T |
|
| Q |
757 |
tgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttgggatatt |
824 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||| | || ||||||||||| |||||||||||||||||| |
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| T |
4349007 |
tgcagagttcagatggtttaactgtggtttcatctgggggagatgagacgcttcgcttttgggatatt |
4349074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 333 - 505
Target Start/End: Complemental strand, 18928709 - 18928523
Alignment:
| Q |
333 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaat |
432 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| | |||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaat |
18928610 |
T |
|
| Q |
433 |
at-----------ccatctatgactaaagttggaggcttggaccctcatact---tcgagagtccttcatctttctcaggtatgctt |
505 |
Q |
| |
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|| |||||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
18928609 |
atgccaatatccatcatctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 18929202 - 18929053
Alignment:
| Q |
16 |
cagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttattggctagtgg |
115 |
Q |
| |
|
|||| |||||||||||||||| |||||| || ||||| |||||| |||| || | |||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
18929202 |
cagttagagcaagaagaaatgtggtttctcgggtaaaagcacacaaagcataagtttgcggtttgaaatggtcgaaaagcagcaatttattggcaagtgg |
18929103 |
T |
|
| Q |
116 |
tggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgt |
165 |
Q |
| |
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||||||||||||||| | ||||| |||||| | ||||| |||||||||| |
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| T |
18929102 |
tggcaatgaaaatcacatctatgtgtgggacgcaaataagatgaactcgt |
18929053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 331 - 439
Target Start/End: Complemental strand, 36841081 - 36840973
Alignment:
| Q |
331 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggca |
430 |
Q |
| |
|
||||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |
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| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaacattaccaactgtgtttgtggca |
36840982 |
T |
|
| Q |
431 |
atatccatc |
439 |
Q |
| |
|
||||||||| |
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|
| T |
36840981 |
atatccatc |
36840973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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