View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13735_high_12 (Length: 310)

Name: NF13735_high_12
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13735_high_12
NF13735_high_12
[»] chr7 (4 HSPs)
chr7 (71-292)||(36156193-36156415)
chr7 (9-94)||(36155945-36156030)
chr7 (90-137)||(36429589-36429636)
chr7 (97-161)||(5100816-5100883)
[»] chr4 (5 HSPs)
chr4 (90-162)||(19997140-19997214)
chr4 (90-167)||(8901547-8901625)
chr4 (106-167)||(8915393-8915454)
chr4 (182-239)||(19533922-19533979)
chr4 (182-226)||(20875359-20875403)
[»] chr5 (1 HSPs)
chr5 (182-231)||(30119001-30119050)
[»] chr8 (1 HSPs)
chr8 (182-226)||(10536876-10536920)
[»] chr1 (1 HSPs)
chr1 (182-226)||(22328074-22328118)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 71 - 292
Target Start/End: Original strand, 36156193 - 36156415
Alignment:
Q  71 tctaactcaattattttttattttacttatgtgtcagttaattaaa-ttgggttagtttgataatttatgtatgttattttcttatatatatagttgaag 169  Q
    ||||||||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36156193 tctaactcaattaatttttattttacttatgagttagataattaaaattgggttagtttgataatttatgtatgttattttcttaaatatatagttgaag 36156292  T
Q  170 acaaatagtagctataagatattgttgaatttgtcaccatgaatattttcaaaatataaactttctataaaatggaatgtttttatcatataagacaatt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36156293 acaaatagtagctataagatattgttgaatttgtcaccatgaatattttcaaaatataaactttgtataaaatggaatgtttttatcatataagacaatt 36156392  T
Q  270 ggagtagtcatggtagataatta 292  Q
    |||||||||||||||||||||||    
T  36156393 ggagtagtcatggtagataatta 36156415  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 36155945 - 36156030
Alignment:
Q  9 gagaagaattcaatagagataagattttgcatgtttagtggaatataaataggaaatttaactctaactcaattattttttatttt 94  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  36155945 gagaaaaattcaatagagataagattttgcttgtttagtagaataaaaataggaaatttaactctaactcaattaatttttatttt 36156030  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 36429589 - 36429636
Alignment:
Q  90 attttacttatgtgtcagttaattaaattgggttagtttgataattta 137  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| ||||    
T  36429589 attttgcttatgtatcagttgattaaattgggttagtttgatagttta 36429636  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 5100883 - 5100816
Alignment:
Q  97 ttatgtgtcagttaattaaattgggttagtttgataatttat---gtatgttattttcttatatatat 161  Q
    |||||||||||||||||||||  | ||| |||||||||||||   ||||||||||||| || ||||||    
T  5100883 ttatgtgtcagttaattaaatatgattaatttgataatttatggggtatgttattttcctaaatatat 5100816  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 19997140 - 19997214
Alignment:
Q  90 attttacttatgtgtcagttaattaaattgggttagtttgataattta---tgtatgttattttcttatatatata 162  Q
    ||||| |||||| |||||||||||||||| ||||| ||||||||||||   | ||| |||||||||||||||||||    
T  19997140 attttgcttatgcgtcagttaattaaatttggttaatttgataatttatcttctat-ttattttcttatatatata 19997214  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 8901625 - 8901547
Alignment:
Q  90 attttacttatgtgtcagttaattaaattgggttagtttgataatttatgt---atgttattttcttatatatatagttga 167  Q
    ||||| |||||||||||  ||||||||||   |||||||||||||||||||   |||||||||||||| ||||||| ||||    
T  8901625 attttgcttatgtgtcaactaattaaattt--ttagtttgataatttatgttgcatgttattttcttaaatatataattga 8901547  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 8915454 - 8915393
Alignment:
Q  106 agttaattaaattgggttagtttgataatttatgtatgttattttcttatatatatagttga 167  Q
    |||||||||| ||| || ||||| |||||| |||||||||||||| ||| ||||||| ||||    
T  8915454 agttaattaatttgagtaagtttcataattcatgtatgttattttattaaatatataattga 8915393  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 19533979 - 19533922
Alignment:
Q  182 tataagatattgttgaatttgtcaccatgaatattttcaaaatataaactttctataa 239  Q
    ||||||||||||||| ||||||| | ||||||||||| ||||||| || ||| |||||    
T  19533979 tataagatattgttggatttgtctcgatgaatatttttaaaatatcaaatttttataa 19533922  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 20875403 - 20875359
Alignment:
Q  182 tataagatattgttgaatttgtcaccatgaatattttcaaaatat 226  Q
    |||||||| |||||  ||||||| |||||||||||||||||||||    
T  20875403 tataagatgttgtttgatttgtctccatgaatattttcaaaatat 20875359  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 30119050 - 30119001
Alignment:
Q  182 tataagatattgttgaatttgtcaccatgaatattttcaaaatataaact 231  Q
    ||||||||||||||||||||||| | || ||||||||| |||||| ||||    
T  30119050 tataagatattgttgaatttgtctcgataaatattttctaaatattaact 30119001  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 10536876 - 10536920
Alignment:
Q  182 tataagatattgttgaatttgtcaccatgaatattttcaaaatat 226  Q
    ||||||||||||||| ||| ||| | |||||||||||||||||||    
T  10536876 tataagatattgttggattcgtctcgatgaatattttcaaaatat 10536920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 22328118 - 22328074
Alignment:
Q  182 tataagatattgttgaatttgtcaccatgaatattttcaaaatat 226  Q
    |||||||| |||||||||| ||| | |||||||||||||||||||    
T  22328118 tataagatgttgttgaattcgtctcgatgaatattttcaaaatat 22328074  T

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