View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13735_high_13 (Length: 280)
Name: NF13735_high_13
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 43200034 - 43200289
Alignment:
| Q |
1 |
agtaccattgtaagtatattgtgctctaatgcatgtaatactttaattatcttggtaaaattaataatgggatctaaaggttgataggaattaagagatg |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43200034 |
agtaccattgtaagtatatggttctctaatgcatgtactactt----------ggtaaaattaataatgggatctaaaggttgataggaattaagagatg |
43200123 |
T |
|
| Q |
101 |
gcaattgttaattaataatgataatgattcgaatgtatacgttcagatacatgtttcatccactttaaacctcttgttttggatgcagaatatgcatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43200124 |
gcaattgttaattaataatgataatgattctaatgtatacgtccagatacatgtttcatccactttaaacctcttgttttggatgcagaatatgcatgtg |
43200223 |
T |
|
| Q |
201 |
ttggataaccaaataaagcatataagaattctttacatacatattac-aaatatcatgtcgtttgt |
265 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
43200224 |
ttggataaccaaatatagcatataagaattctttgcatacatattacaaaatgtcatgtcgtttgt |
43200289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University