View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_high_4 (Length: 478)
Name: NF13735_high_4
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 488294 - 487842
Alignment:
| Q |
11 |
cagagatctagcagctaatgattgcagtaggtgtctactaagtgctattggagatataccaggttgctgttatgcctccattggtgcgagagttatgagt |
110 |
Q |
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| T |
488294 |
cagagatctagcagctaatgattgcagtaggtgtctactaagtgctattggagatataccaggttgctgttatgcctccattggtgcgagagttatgagt |
488195 |
T |
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| Q |
111 |
cgtagctgttatctgagatatgaattctatccattttatcttggtgaaaaagaacaaacaaagtcttctaccaacctaggagggaaaagtaagcatttct |
210 |
Q |
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| T |
488194 |
cgcagctgttatctgagatatgaattctatccattttatcttggtgaaaaagaacaaacaaagtcttctaccaacctaggagggaaaagtaagcatttct |
488095 |
T |
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| Q |
211 |
caagttgcaatacaattcttaaacattctgtcaaagctagttttgattgatcttttgtgcagataattcaagcaaaatatggatgattacagtcattgca |
310 |
Q |
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| T |
488094 |
caagttgcaatacaattcttaaacattctgtcaaagctagttttgattgatcttttgtgcagataattcaagcaaaatatggatgattacagtcattgca |
487995 |
T |
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| Q |
311 |
gttggggtaggcttggtcataataattttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgtttggagattgtatatcagtgtttttca |
410 |
Q |
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| T |
487994 |
gttggggtaggcttggtcataataattttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgtttggagattgtatatcagtgtttttca |
487895 |
T |
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| Q |
411 |
tttattttatggtatatattgtagcaccaatactttgaattgaaagtgtttct |
463 |
Q |
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| T |
487894 |
tttattttatggtatatattgtagcaccaatactttgaattgaaagtgtttct |
487842 |
T |
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