View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_high_6 (Length: 434)
Name: NF13735_high_6
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 2811417 - 2810987
Alignment:
| Q |
1 |
ctaataaaatccaagcacacacatcattgatgagggaagttgaaagtgaaagctttcctagttctgtgttgatgagtttgagctcggcaagcattcgagc |
100 |
Q |
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| T |
2811417 |
ctaataaaagccaagcacacacatcattgatgagggaagttgaaagtgaaagctttcctagttctgtgttgatgagtttgagctcggcaagcattcgagc |
2811318 |
T |
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| Q |
101 |
gagcacaggaaatgaggtgacagatagaacaataccaagatagagaacaaagctgaagtcatttacactttcatctctatcagtgaaagcaaaggagact |
200 |
Q |
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| T |
2811317 |
gagcacaggaaatgaggtgacagatagaacaataccaagatagagaacaaagctgaagtcatttacactttcatctctaccagtgaaagcaaaggagact |
2811218 |
T |
|
| Q |
201 |
cccaaaccaacaataaagggcaatatcataccagcaactgcaatggacaccgcctttgcaccggtgcgtttcacaatagatatgtccatctctaaaccaa |
300 |
Q |
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| T |
2811217 |
cccaaaccaacaataaagggcaatatcataccagcaactgcaatggacaccgcctttgcaccggtgcgtttcacaatagatatgtccatctctaaaccaa |
2811118 |
T |
|
| Q |
301 |
ttaggaacagaaagtatatcagacctatgtttgccattgtttctaaaaccattgcactttttagtggaaatacaatatttgcaaaattttcatgtctacc |
400 |
Q |
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| T |
2811117 |
ttaggaacagaaagtatatcagacctatgtttgccattgtttctaaaaccattgcactttttagtggaaatacaatatttgcaaaattttcatgtctacc |
2811018 |
T |
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| Q |
401 |
aagcactgatggccccaagaataatctaccc |
431 |
Q |
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| T |
2811017 |
aagcactgatggccccaagaacaatccaccc |
2810987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 44056092 - 44056208
Alignment:
| Q |
8 |
aatccaagcacacacatcattgatgagggaagttgaaagtgaaagctttcctagttctgtgttgatgagtttgagctcggcaagcattcgagcgagcaca |
107 |
Q |
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||||||||||||||||||| ||||||| | || ||||| | ||||||||||| ||||||||||||||||| |||||||| || || | ||| || ||| |
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| T |
44056092 |
aatccaagcacacacatcactgatgagtgcagccgaaagagcaagctttcctatatctgtgttgatgagttttagctcggcgaggatcctagctagaaca |
44056191 |
T |
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| Q |
108 |
ggaaatgaggtgacaga |
124 |
Q |
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| T |
44056192 |
ggaaatgcagtgacaga |
44056208 |
T |
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