View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_low_12 (Length: 386)
Name: NF13735_low_12
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 34187523 - 34187158
Alignment:
| Q |
21 |
caaggttgagaaactccagattttacgctcatagcaaacatacggttagtagtcatgtatgtttcgaaaataaggcccttttcattaaacacactacact |
120 |
Q |
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| T |
34187523 |
caaggttgagaaactccagattttacgctcatagcaaacatacggttagtagtcatgtatgtttcgaaaataagacccttttcattaaacacactacact |
34187424 |
T |
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| Q |
121 |
tgttttgcttcatttcaacattcaatcctctttccaaaaattgccccacactaaataaattattttttaactcaggcacataaaatacatcattcaccaa |
220 |
Q |
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| T |
34187423 |
tgttttgcttcatttcaacattcaatcctctttccaaaaattgccccacactaaataaattattttttaactcaggcacataaaatacatcattcacaaa |
34187324 |
T |
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| Q |
221 |
atgcataactccattaatcaaaagtttgacaacacccttcccattgaccttaagagcataattatttcctaattttacctcatcacaaaaagaagcatca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34187323 |
atgcataactccattaatcaaaagtttgacaacacccttcccattgaccttaagagcataattatttcctaattttacctcatcacaaaaagaagcatca |
34187224 |
T |
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| Q |
321 |
agtgaagaaaaccagtcctttctacctgtcatatggttgctacagcctgaatcgatgaaccacatg |
386 |
Q |
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| T |
34187223 |
agtgaagaaaaccagtcctttctacctgtcatatggttgctgcagcctgaatcgatgaaccacatg |
34187158 |
T |
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