View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_low_13 (Length: 377)
Name: NF13735_low_13
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 49576403 - 49576052
Alignment:
| Q |
16 |
cagtagaagcatcccaaatcctgcaaagaccatcataactactggaaacaataagagtcccatcgcggttaaaatcaacagcagtcaccggatcagaatg |
115 |
Q |
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| T |
49576403 |
cagtagaagcatcccaaatcctgcaaagaccatcataactactggaaacaataagagtcccatcgcggttaaaatcaacagcagtcaccggatcagaatg |
49576304 |
T |
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| Q |
116 |
cgcaggtaaaaccttaagacacttcccagacttaacatcccaaaccctaacagtctcatcaaacgaaccagaaacaataacattactctgaggattaaaa |
215 |
Q |
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| T |
49576303 |
cgcaggtaaaaccttaagacacttcccagacttaacatcccaaaccctaacagtctcatcaaacgaaccagaaacaataacattactctgaggattaaaa |
49576204 |
T |
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| Q |
216 |
ttaacacagaaaacgtaattcgtatgaccgtgaagagtcttcacaagcgaacccgtcggaacatcccataaacggatggttttgtcgtcggaggcggaga |
315 |
Q |
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| T |
49576203 |
ttaacacagaaaacgtaattcgtatgaccgtgaagagtcttcacaagcgaacccgtaggaacatcccataaacggatggttttgtcgtcggaggcggaga |
49576104 |
T |
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| Q |
316 |
caaggtagcgggaatcggaggagaaagcgaggtcggaaacgccgtgatgatg |
367 |
Q |
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| T |
49576103 |
caaggtagcgggaatcggaggagaaagcgaggtcggaaacgccgtgctgatg |
49576052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 32004961 - 32005013
Alignment:
| Q |
138 |
ttcccagacttaacatcccaaaccctaacagtctcatcaaacgaaccagaaac |
190 |
Q |
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| T |
32004961 |
ttcccagtcttcacttcccaaaccctaaccgtctcatcaaacgaacccgaaac |
32005013 |
T |
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