View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_low_17 (Length: 250)
Name: NF13735_low_17
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 51767899 - 51768121
Alignment:
| Q |
16 |
atgaacttccttcattgaaaactttagtctaaaatagattttgctttgttaccaattagtctgctttcaaaatataatttgtgggttttagattctaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767899 |
atgaacttccttcattgaaaactttagtctaaaatagattttgctttgttaccaattagtctgctttcaaaatataatttgtgggttttagattctaaat |
51767998 |
T |
|
| Q |
116 |
acaagtaaattacatagaaattatggaaagaaaactgaaagaggtcacaaacatgatacacttacaattatgttacttgaaaaagtagtttcattatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767999 |
acaagtaaattacatagaaattatggaaagaaaactgaaagaggtcacaaacatgatagacttacaattatgttacttgaaaaagtagtttcattatgtt |
51768098 |
T |
|
| Q |
216 |
aagcatgggattcaacatgaact |
238 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
51768099 |
aagcatgggattcaacatgaact |
51768121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 6409843 - 6409749
Alignment:
| Q |
16 |
atgaacttccttcattgaaaactttagtctaaaatagattttgctttgttaccaattagtctgctttcaaaatataatttgtgggttttagattcta |
112 |
Q |
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||||| |||||||||||||||||||||| | ||||| ||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
6409843 |
atgaatttccttcattgaaaactttagtttgaaatatattttgctttgttgctaattag--tgctttcataatataatttgtgggttttagattcta |
6409749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 6422938 - 6422815
Alignment:
| Q |
121 |
taaattacatagaaattatggaaagaaaactgaaagaggtcacaaacatgatacacttacaattatgttacttgaaaaagtagtttcattatgttaagca |
220 |
Q |
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||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||| | |||||||||| |||||||||||| |||||| ||| | |
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| T |
6422938 |
taaattacatagaaattattgaaagaaaacaaaaagtggtcacaaacatgatattcttatagttatgttactaaaaaaagtagttttgttatgtcaagta |
6422839 |
T |
|
| Q |
221 |
tgggattcaacatgaactgactat |
244 |
Q |
| |
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||||||||||| | ||| |||||| |
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| T |
6422838 |
tgggattcaacgtcaacagactat |
6422815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 6431978 - 6431843
Alignment:
| Q |
87 |
atataatttgtgggttttagattctaaa-------tac-aagtaaattacatagaaattatggaaagaaaactgaaagaggtcacaaacatgatacactt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||| |||||||||||||||| ||||||| | || |
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| T |
6431978 |
atataatttgtgggttttagattctaaacaagacttactaaataaattacatagaaattatggaaataaatctgaaagaggtcacaatcatgataaattt |
6431879 |
T |
|
| Q |
179 |
acaattatgttacttgaaaaagtagtttcattatgt |
214 |
Q |
| |
|
|||||| |||||| ||| ||||||| ||||||| |
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| T |
6431878 |
gcaattaccttacttttaaatgtagtttaattatgt |
6431843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 6402593 - 6402445
Alignment:
| Q |
71 |
ttagtctgctttcaaaatataatttgtgggttttagattctaaa-------tacaagtaaattacatagaaattatggaaagaaaactgaaagaggtcac |
163 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| | ||| || || ||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
6402593 |
ttagtcagctttcataatataatttgtgggttttagatacaaaaaagacattataaataaattacatagaaaatatggatagaaaaccgaaagaggtcac |
6402494 |
T |
|
| Q |
164 |
aaacatgatacacttacaattatgttacttgaaaaagtagtttcattatgttaa |
217 |
Q |
| |
|
|| |||||| | ||||||| |||||| |||| ||| |||||||||||||| |
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|
| T |
6402493 |
aa-----atacacctgcaattatattacttaaaaatgtattttcattatgttaa |
6402445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 7118965 - 7118898
Alignment:
| Q |
47 |
aaatagattttgctttgttaccaattagtctgctttcaaaatataatttgtgggttttagattctaaa |
114 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||| ||| |||| |
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| T |
7118965 |
aaatagatttttatttgttgccaattagtatgctttcataatataatttgtgggttttaaattttaaa |
7118898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 7131443 - 7131376
Alignment:
| Q |
47 |
aaatagattttgctttgttaccaattagtctgctttcaaaatataatttgtgggttttagattctaaa |
114 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||| ||| |||| |
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| T |
7131443 |
aaatagatttttatttgttgccaattagtatgctttcataatataatttgtgggttttaaattttaaa |
7131376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 6432029 - 6431986
Alignment:
| Q |
16 |
atgaacttccttcattgaaaactttagtctaaaatagattttgc |
59 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
6432029 |
atgaatttccttcattgaaaactttagtctgaaatatattttgc |
6431986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 10611972 - 10612064
Alignment:
| Q |
22 |
ttccttcattgaaaactttagtctaaaatagattttgctttgttaccaattagtctgctttcaaaatataatttgtgggttttagattctaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||| |||||| | || ||||||| | |||||||| ||||||||||||||| |
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| T |
10611972 |
ttccttcattgaaaactttagtctgaaattgattttttattgttgtcaattattttgttttcaaagttgaatttgtgagttttagattctaaa |
10612064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 10612072 - 10612110
Alignment:
| Q |
151 |
tgaaagaggtcacaaacatgatacacttacaattatgtt |
189 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| |
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| T |
10612072 |
tgaaaaaggtcacaaacatgataaacttacaattatgtt |
10612110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 38481422 - 38481524
Alignment:
| Q |
138 |
atggaaagaaaactgaaagaggtcacaaacatgatacacttacaattatgttacttgaaaaagtagtttcattatgttaagcatgggattcaacatgaac |
237 |
Q |
| |
|
||||||||||||| || ||||||| ||||| ||||||||||| |||| ||| | |||||||||| | ||||||| ||||||| ||||||||| ||| | |
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| T |
38481422 |
atggaaagaaaacagacagaggtcgcaaacgcgatacacttacgattaagtt-cctgaaaaagtatatccattatgctaagcataggattcaacctgacc |
38481520 |
T |
|
| Q |
238 |
tgac |
241 |
Q |
| |
|
|||| |
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|
| T |
38481521 |
tgac |
38481524 |
T |
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