View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_low_2 (Length: 771)
Name: NF13735_low_2
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_low_2 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 43963195 - 43963724
Alignment:
| Q |
1 |
cagtaatatgccatcaaggttcaaaccagataatcttctaagagagtcttctaatgacaagggggaatctccaagttattttt-atctagggggcaaaca |
99 |
Q |
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| T |
43963195 |
cagtaatatgccattagggttcaaaccagataatcttctaagagagtcttctaatgacaagggggaatctccaagtttttttttatctagggggcaaaca |
43963294 |
T |
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| Q |
100 |
aaaatgcacccatatggcagggggtaaaagtctttgaacccttaaaagaaacacttcaaaacactgaaacaccacactaatgcatgcaaaacagtataaa |
199 |
Q |
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| T |
43963295 |
aaaatgcacccatatggcagggggtaaaagtctttgaacccttaaaagaaacacttcaaaacactgaaacaccacactaatgcatgcaaa-cagtataaa |
43963393 |
T |
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| Q |
200 |
atagagaaaacgatgaaataaccaacaagaacatcgaagttaatgggatgtaaggccttacaagcccattccggcagcaaagccgttatcgacaaacatc |
299 |
Q |
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| T |
43963394 |
atagagaaaacgatgaaataaccaacaagaacatcgaagttaatgggatgtaaggccttacaagcccattccggcggcaaagccgttatcgacaaacatc |
43963493 |
T |
|
| Q |
300 |
aagagccggaaaacgaacacagcagtgtagtccacctgaagaaaagtggaagnnnnnnnnnggatgactaacgatataatcttaacaagggagctaaaaa |
399 |
Q |
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| T |
43963494 |
aagagccggaaaacgaacacagcagtgtagtccacctgaagaaaagtggaa--aaaaaaatggatgactaacgatataatcttaacaaaggagctaaaaa |
43963591 |
T |
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| Q |
400 |
cgcaatgatcttaaaaaggaaacccaccacaatccatatatgcaatgggtatgtacaagaatgatagcgcttccaattgattgcaacaataactctaaat |
499 |
Q |
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| T |
43963592 |
cgcaatgatcttaaaaaggaaacccaccacaatccatatatgcaatgggtatgtacaagaatgatagcgcttccaattgattgcaacaataactctaaat |
43963691 |
T |
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| Q |
500 |
tcaaagtcaagaaaacaagcattctatatggca |
532 |
Q |
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| T |
43963692 |
tcaaagtcaaaaaaacaagcattctatatggca |
43963724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 599 - 755
Target Start/End: Original strand, 43963791 - 43963959
Alignment:
| Q |
599 |
ggatacacgctggtggcgagcatggagaggaaaaatccatcgtacctggaaggagaaagttgcattgaatcaaaattgggataagagaggaaatagtatt |
698 |
Q |
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| T |
43963791 |
ggatacacgctggtggcgagcatggagaggaaaaatccatcgtacctggaaggagaaagttgcattgaatcaaaattgggataagagaggaaatagtatt |
43963890 |
T |
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| Q |
699 |
attggaatca------------gagagagaagactaaccacttgaaatcgacgcctctgatagccatgg |
755 |
Q |
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| T |
43963891 |
attggaatcagagagagagagggagagagaagactaaccacttgaaatcgacgcctctgatagccatgg |
43963959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 12861502 - 12861423
Alignment:
| Q |
51 |
ctaatgacaagggggaatctccaagttatttttat-ctagggggcaaacaaaaatgcacccatatggcagggggtaaaag |
129 |
Q |
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| T |
12861502 |
ctaatgacaagggggaatctccaagttttttttttgttagggggtaaaccaaaacacccccaaatagcagggggtaaaag |
12861423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 40462365 - 40462288
Alignment:
| Q |
47 |
tcttctaatgacaagggggaatctccaagttatttttat-ctagggggcaaacaaaaatgcacccatatggcaggggg |
123 |
Q |
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| T |
40462365 |
tcttctaatggcaagggggaatctccaagttttttttttcctagggggtaaaccaaaagtcacccatatggcaggggg |
40462288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 9756760 - 9756845
Alignment:
| Q |
58 |
caagggggaatctccaagttatttttatctaggg-ggcaaacaaaaatgcacccatatggcagggggtaaaagtctttgaaccctt |
142 |
Q |
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| T |
9756760 |
caagggggaatctccaagttttttttccgtagggaggtaaaccaaaaggcgctcatatgacagggggtaaaagtcatttaaccctt |
9756845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 2853 - 2758
Alignment:
| Q |
47 |
tcttctaatgacaagggggaatctccaagttatttttatcta-gggggcaaacaaaaatgcacccatatggcaggggg-taaaagtctttgaaccctt |
142 |
Q |
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| T |
2853 |
tcttctaatggcaagggggaatctccaagt--ttttttcctaggggggtaaaccaaaagtcacccatatgacagggggataaaagtctattaaccctt |
2758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 37182165 - 37182084
Alignment:
| Q |
47 |
tcttctaatgacaagggggaatctccaagttatttttatctagggggcaaacaaaaatgcacccatatggcagggggtaaaag |
129 |
Q |
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| T |
37182165 |
tcttctaatgacaagggagaatctacaagtt-ttttttcctagggggtaagccaaaagacgcccatatagcagggggtaaaag |
37182084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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